Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., Small GTP-binding protein protein domain:GTP-binding protein from Pseudomonas syringae pv. syringae B728a

 Score =  567 bits (1460), Expect = e-166
 Identities = 289/498 (58%), Positives = 371/498 (74%), Gaps = 18/498 (3%)

Query: 1   MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60
           MVPV+ALVGRPNVGKST+FNRLTRTRDA+V D  GLTRDR+YG+AK     +I+IDTGGI
Sbjct: 1   MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60

Query: 61  DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKV 120
            G E G++ KMA+QSL AI+EADVVLF+VD RAG T AD+ I +HLR+  K + +V NK+
Sbjct: 61  SGDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKI 120

Query: 121 DGIDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESEQAQLEDLTNEE 180
           D ID + A AEF  +G+     +A AHGRG+  +++  L  F                +E
Sbjct: 121 DNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPR--------------DE 166

Query: 181 DPEEEQLEYSEEEAEAEYKRL----QDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDM 236
           D  EE +E  E     E KR+    +   IK+AIIGRPNVGKSTL NR+LGE+RV+VYD 
Sbjct: 167 DEPEEGVEVEEVAEGQEAKRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDE 226

Query: 237 PGTTRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVD 296
           PGTTRDSIYIP +R+E +Y LIDTAGVR+R +I+E VEKFSVVKTLQAI+DANVV+ V+D
Sbjct: 227 PGTTRDSIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMD 286

Query: 297 ARENISDQDLSLLGFALNSGRSIVIAVNKWDGLSFDVKEHVKKELDRRLGFVDFARIHFI 356
           ARE + D DL+LLGFAL +GR++VIA+NKWDG++   ++ VK EL+RRL FVDFA IHFI
Sbjct: 287 AREGVVDHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHFI 346

Query: 357 SALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAG 416
           SA+HGTGVG+L++SVQ +++SA TR  TS LT+I++ A  +H PPMV  RR+KL+YAH G
Sbjct: 347 SAMHGTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLG 406

Query: 417 GYNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGKTNKMTL 476
           G NPP+IVIHGNQV ++P SY RYL N YR+ L+++GTPIRI+F+  ENP+EG  N +T 
Sbjct: 407 GANPPLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPYEGNKNTLTD 466

Query: 477 SQERQRKRLMSMVKNRRK 494
            Q  +++R+MS  K   K
Sbjct: 467 RQVNKKRRMMSHHKKADK 484