Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., GTP-binding protein Era (RefSeq) from Shewanella amazonensis SB2B

 Score = 75.9 bits (185), Expect = 2e-18
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 4   VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63
           +VA+VGRPNVGKSTL N+L + + ++ +  P  TR R  G    G ++ + IDT G+   
Sbjct: 40  MVAIVGRPNVGKSTLLNKLLKQKISITSRKPQTTRHRIMGIHTEGPNQIVFIDTPGLHIE 99

Query: 64  EE-GVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRR--IEKPAILVVNKV 120
           E+  +   M + + +++ +  +V+F+VDG    T  DE +   LRR    +  +L +NKV
Sbjct: 100 EKRAINRLMNRAAASSLADVSMVIFVVDGME-WTADDEMVLNKLRRGGEHRKTVLAINKV 158

Query: 121 DGIDADAASAEFW-----QLGMDQMYQIAAAHGRGVGALID 156
           DGI        +      +   D +  ++A  G  V  L+D
Sbjct: 159 DGIKEKEDLFPYLIEVSKKYPFDDIVPVSAKQGSNVERLLD 199



 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 19/215 (8%)

Query: 163 AEQMESEQAQLEDLTNEEDPEEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLT 222
           A  +   +  LEDL  + + + +     EE  +  Y  +      +AI+GRPNVGKSTL 
Sbjct: 6   APGVPENEPSLEDLLAQMNSQNQP----EEHYDVTYCGM------VAIVGRPNVGKSTLL 55

Query: 223 NRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAG--VRRRKRINETVEKFSVVK 280
           N++L ++  +    P TTR  I         + V IDT G  +  ++ IN  + + +   
Sbjct: 56  NKLLKQKISITSRKPQTTRHRIMGIHTEGPNQIVFIDTPGLHIEEKRAINRLMNRAAA-- 113

Query: 281 TLQAIEDANVVLLVVDARENISDQDLSLLGFAL-NSGRSIVIAVNKWDGLSFDVKEHVKK 339
              ++ D ++V+ VVD  E  +D ++ L         R  V+A+NK DG+    KE +  
Sbjct: 114 --SSLADVSMVIFVVDGMEWTADDEMVLNKLRRGGEHRKTVLAINKVDGIK--EKEDLFP 169

Query: 340 ELDRRLGFVDFARIHFISALHGTGVGHLFESVQEA 374
            L        F  I  +SA  G+ V  L +  +E+
Sbjct: 170 YLIEVSKKYPFDDIVPVSAKQGSNVERLLDLARES 204