Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., Small GTP-binding protein domain (NCBI) from Rhodospirillum rubrum S1H

 Score =  295 bits (755), Expect = 2e-84
 Identities = 180/498 (36%), Positives = 275/498 (55%), Gaps = 33/498 (6%)

Query: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGID-GS 63
           VA++GRPNVGKSTLFNRL   R A+V D PG+TRDR+ G+A L +  F V+DT G++   
Sbjct: 4   VAIIGRPNVGKSTLFNRLCGRRLAIVHDMPGVTRDRREGKASLADLVFRVVDTAGLEEAG 63

Query: 64  EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123
            E +E +M QQ+  A+ EA V L ++D RAG+T  D   A+ LR+   P ILV NK +G 
Sbjct: 64  PEVLEGRMRQQTDRALSEAHVALMLIDSRAGVTPLDAHFAEILRKAPIPVILVANKCEGG 123

Query: 124 DADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESEQAQLED-------- 175
                  E + +G+     ++A HG G+  L + ++  +   M  E     D        
Sbjct: 124 AGKPGFYESYSMGLGDPVPLSAEHGEGLSLLYEALMPIYDAHMAQEAKDEADAVRAAFLE 183

Query: 176 ---------------LTNEEDPEEEQLEYSEEEAE----AEYKRLQDLPIKLAIIGRPNV 216
                          L  +E PE++  + S++  +      +    + PI++AIIGRPN 
Sbjct: 184 TEAASAAKPYIDFASLEPDEVPEDDDSDPSQDPEDDFSVEAFDPRGERPIQMAIIGRPNT 243

Query: 217 GKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKF 276
           GKSTL NR++G++R+V     G TRD+I +  +   R + L+DTAG+RR+ R+  ++EK 
Sbjct: 244 GKSTLINRLIGDDRLVTGPEAGVTRDAIEVDWEWGGRRFRLVDTAGLRRKARVENSLEKL 303

Query: 277 SVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWDGLSFDVKEH 336
            V  TL AI  A V +L++DA   +  QDL++    ++ GR++VIAVNKWD  + D K  
Sbjct: 304 MVADTLNAIRLAEVCVLMLDANMVMDRQDLTIARLVIDEGRALVIAVNKWDACA-DRKAA 362

Query: 337 VKKELDR---RLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKM 393
           +++  DR    L  V       +SAL G G+  L ++  EA+     RV TS   R +K 
Sbjct: 363 LQRLADRLETSLAQVRGVPFVTLSALEGHGLNRLMDAALEAHAKWNRRVPTSRFNRWLKG 422

Query: 394 ATDDHQPPMVR-GRRVKLKYAHAGGYNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIM 452
             D H  PM + GRR++++Y       PP   +   + ++LP+SY RYL +  R+  ++ 
Sbjct: 423 MIDRHPLPMGKHGRRLRIRYGTQAKIRPPTFALFMTRPDDLPESYVRYLNSGLREDFDMA 482

Query: 453 GTPIRIQFQNSENPFEGK 470
           GTPIR+ F+ ++NP+  K
Sbjct: 483 GTPIRLLFRATKNPYADK 500