Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., GTP-binding protein Era (NCBI) from Rhodospirillum rubrum S1H

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 11/212 (5%)

Query: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64
           VA++G PN GKSTL NRL  ++  +V+     TR R  G A +GE + + +DT GI    
Sbjct: 20  VAVIGAPNAGKSTLVNRLVGSKVTIVSPKVQTTRSRVRGIAMVGEAQVVFVDTPGIFQPR 79

Query: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124
           +  +  M   +     EAD+VL ++D   G+T   E I   L+   + A+L +NKVD ++
Sbjct: 80  KRFDRAMVAAAWEGALEADLVLLVIDAHKGITAEVEEILTKLKATGRRALLALNKVDALE 139

Query: 125 ----ADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESEQAQLEDLTNEE 180
                + AS     L  ++++ I+A  G G     D VL   AE++ +      +  +E 
Sbjct: 140 RSRLLEMASRLDAALPFEKVFMISALTGSG----CDDVLAWLAERVPAGPWMFPE--DEV 193

Query: 181 DPEEEQLEYSEEEAEAEYKRL-QDLPIKLAII 211
               ++L  +E   E  + +L ++LP   A++
Sbjct: 194 SDLPQRLLAAEITREKVFLQLHEELPYAAAVV 225



 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 8/157 (5%)

Query: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGV-RRR 266
           +A+IG PN GKSTL NR++G +  +V     TTR  +       E + V +DT G+ + R
Sbjct: 20  VAVIGAPNAGKSTLVNRLVGSKVTIVSPKVQTTRSRVRGIAMVGEAQVVFVDTPGIFQPR 79

Query: 267 KRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKW 326
           KR +  +    V    +   +A++VLLV+DA + I+ +   +L     +GR  ++A+NK 
Sbjct: 80  KRFDRAM----VAAAWEGALEADLVLLVIDAHKGITAEVEEILTKLKATGRRALLALNKV 135

Query: 327 DGLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTG 363
           D L       +   LD  L    F ++  ISAL G+G
Sbjct: 136 DALERSRLLEMASRLDAAL---PFEKVFMISALTGSG 169