Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., GTP-binding protein Era (RefSeq) from Shewanella loihica PV-4

 Score = 77.0 bits (188), Expect = 9e-19
 Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 4   VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63
           +VA+VGRPNVGKSTL N+L   + ++ +  P  TR R  G    G  + + IDT G+   
Sbjct: 39  MVAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHIE 98

Query: 64  EE-GVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQ--HLRRIEKPAILVVNKV 120
           E+  +   M + + +++ E  +V+F+VDG    T  DE + +  H R   +  IL +NKV
Sbjct: 99  EKRAINRLMNRAASSSLAEVSLVVFVVDG-LNWTADDEMVLKKLHNRDDGRKTILAINKV 157

Query: 121 DGI-DADAASAEFWQLG----MDQMYQIAAAHGRGVGALIDRVLNPFAE 164
           D I D +A       L      D++  I+A HG  V  +++  L    E
Sbjct: 158 DNIKDKEALFPHLQTLAAKFEFDEILPISATHGTNVQRIMELALESVPE 206



 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAG--VRR 265
           +AI+GRPNVGKSTL N++LG++  +    P TTR  I        R+ V IDT G  +  
Sbjct: 40  VAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHIEE 99

Query: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGF-ALNSGRSIVIAVN 324
           ++ IN  + +        ++ + ++V+ VVD     +D ++ L      + GR  ++A+N
Sbjct: 100 KRAINRLMNR----AASSSLAEVSLVVFVVDGLNWTADDEMVLKKLHNRDDGRKTILAIN 155

Query: 325 KWDGLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEA 374
           K D +    KE +   L       +F  I  ISA HGT V  + E   E+
Sbjct: 156 KVDNIK--DKEALFPHLQTLAAKFEFDEILPISATHGTNVQRIMELALES 203