Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., tRNA modification GTPase TrmE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 74.7 bits (182), Expect = 6e-18
 Identities = 70/239 (29%), Positives = 109/239 (45%), Gaps = 23/239 (9%)

Query: 148 GRGVGAL---IDRVLNPFAEQMESEQAQLEDLTNEEDPEE-EQLEYSEEEAEAEYKRL-- 201
           G+ VGAL   +D +       ++  + ++E L  E    E E +     E  A Y R   
Sbjct: 157 GQRVGALRARLDALRMQLCVAVDFPEEEVECLAPEAFLAEIEAVRQGVVELSAGYARTRC 216

Query: 202 -QDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDT 260
            QD  + + + G+ N GKS+L N +LG  R +V D+PGTTRD I  P+        L DT
Sbjct: 217 WQDGAL-VVLAGQVNAGKSSLMNALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADT 275

Query: 261 AGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIV 320
           AG+R      + VE+  V  +   +  A++VLLV DA + +   +L LL  A      ++
Sbjct: 276 AGLR---ETGDIVEQEGVRMSRDLVAQADLVLLVTDATQGLQGPELELLRHA--GPERVL 330

Query: 321 IAVNKWDGLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSAT 379
           +  NK D L   +               +  R   ++A  G GV  L  +++ A  +AT
Sbjct: 331 VVFNKTDLLEGRILPSTP----------EGCRSVHVAAASGDGVESLVTAIRAAVLAAT 379



 Score = 60.5 bits (145), Expect = 1e-13
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 4   VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63
           +V L G+ N GKS+L N L   R A+V D PG TRD       L      + DT G+  +
Sbjct: 222 LVVLAGQVNAGKSSLMNALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRET 281

Query: 64  EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123
            + VE +  + S   + +AD+VL + D   GL   +  + +H     +  ++V NK D +
Sbjct: 282 GDIVEQEGVRMSRDLVAQADLVLLVTDATQGLQGPELELLRHAG--PERVLVVFNKTDLL 339

Query: 124 DADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRV 158
           +     +     G   ++ +AAA G GV +L+  +
Sbjct: 340 EGRILPST--PEGCRSVH-VAAASGDGVESLVTAI 371