Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., putative GTPase, ThdF family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 10/188 (5%)

Query: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265
           + +AIIG  N GKSTL N +L E++ +V D+ GTTRD I   +      +  IDTAG+R 
Sbjct: 221 VPVAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIR- 279

Query: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISD-QDLSLLGFALNSGRSIVIAVN 324
               N+T+E   + +T Q ++ A +VL +VD+ +  S  + LS         + +++  N
Sbjct: 280 --ETNDTIESLGIERTFQKLDQAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFN 337

Query: 325 KWDGLSFDVKEHVKKELDRRLGFV--DFARIHFISALHGTGVGHLFESVQEAYRSATTRV 382
           K D     ++E  K+EL   L     ++ +  FISA        L + +  A    T   
Sbjct: 338 KAD----LIEEMQKEELSALLKNFPKEYTKSIFISAKERRQTDELQKMLINAAHLPTVTQ 393

Query: 383 GTSVLTRI 390
              ++T +
Sbjct: 394 NDIIVTNV 401



 Score = 67.8 bits (164), Expect = 8e-16
 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64
           VA++G  N GKSTL N L     A+V+D  G TRD       +G   F  IDT GI  + 
Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETN 282

Query: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRI-EKPAILVVNKVDGI 123
           + +E+   +++   +D+A++VL+MVD     +   +   + + R  EK  I+V NK D I
Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLI 342

Query: 124 D 124
           +
Sbjct: 343 E 343