Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., putative phosphoglycerate dehydrogenase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  287 bits (734), Expect = 6e-82
 Identities = 169/462 (36%), Positives = 265/462 (57%), Gaps = 40/462 (8%)

Query: 4   VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGG-IDG 62
           +VA+VGRPNVGKSTLFNRLT+TR A+V +  G TRDR+YG+++    EF V+DTGG +  
Sbjct: 4   LVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVN 63

Query: 63  SEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDG 122
           S++  E ++ +Q L A++EADV+LF+VD   G+T  D  +A  LRR   P I+V NK D 
Sbjct: 64  SDDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVATILRRANSPVIMVANKTDN 123

Query: 123 IDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESEQAQLEDLTNEEDP 182
            +    + EF++LG+   Y I+A  G G G L+D +++ F      E +++ D       
Sbjct: 124 NELQYNAPEFYKLGLGDPYCISAITGSGTGDLMDLIVSKF----NKETSEILD------- 172

Query: 183 EEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRD 242
                               D+P + A++GRPN GKS++ N  +GE+R +V ++ GTTRD
Sbjct: 173 -------------------DDIP-RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRD 212

Query: 243 SIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARENIS 302
           SIY    +   ++ L+DTAG+R++ ++NE +E +SVV+++++IE+A+V +L++DA   + 
Sbjct: 213 SIYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRSIENADVCILMLDATRGVE 272

Query: 303 DQDLSLLGFALNSGRSIVIAVNKWDGLSFDVKEHVKKELD-----RRLGFVDFARIHFIS 357
            QDL++L     + + +V+ +NKWD L  D    + KE +     R   FVDF  I F S
Sbjct: 273 SQDLNILSLIQKNQKGLVVVINKWD-LIEDKTAKMMKEFEATIRSRFAPFVDFP-IIFAS 330

Query: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKY-AHAG 416
           AL    +  + E  +  Y + TT++ T+ L   M    + + PP  +G+ +K+KY     
Sbjct: 331 ALTKQRILKVLEEARNVYENRTTKIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYITQLP 390

Query: 417 GYNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRI 458
               P  V   N    + + YKR+L N  R+   + GTPI I
Sbjct: 391 NTQVPSFVYFANLPQYVKEPYKRFLENKMREKWNLTGTPINI 432



 Score = 68.2 bits (165), Expect = 6e-16
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 3/130 (2%)

Query: 2   VPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI- 60
           +P  A+VGRPN GKS++ N        +V +  G TRD  Y +      +F ++DT GI 
Sbjct: 175 IPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIR 234

Query: 61  --DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVN 118
             +   E +E     +S+ +I+ ADV + M+D   G+   D  I   +++ +K  ++V+N
Sbjct: 235 KKNKVNEDLEYYSVVRSIRSIENADVCILMLDATRGVESQDLNILSLIQKNQKGLVVVIN 294

Query: 119 KVDGIDADAA 128
           K D I+   A
Sbjct: 295 KWDLIEDKTA 304