Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., GTP-binding protein Era (RefSeq) from Shewanella sp. ANA-3

 Score = 77.0 bits (188), Expect = 9e-19
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 14/172 (8%)

Query: 4   VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63
           +VA++GRPNVGKSTL NRL   + ++ +  P  TR R  G    G  + + IDT G+   
Sbjct: 47  MVAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPRQIVFIDTPGLHIE 106

Query: 64  EE-GVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRR--IEKPAILVVNKV 120
           E+  +   M + + +++ +  +V+F+VDG    T  DE +   LRR   E+  +L +NKV
Sbjct: 107 EQRAINRLMNRAAASSLADVSMVIFVVDGMT-WTADDEMVLSKLRRGGEERKTVLAINKV 165

Query: 121 DGIDADAASAEFWQ-----LGMDQMYQIAAAHGRGVGALIDRVL-----NPF 162
           D I    A   + +        D++  I+A+ G  V  +++        NPF
Sbjct: 166 DNIKDKEALFPYLEEVAKKYPFDEILPISASKGTNVKRILEMAAESLPENPF 217



 Score = 71.2 bits (173), Expect = 5e-17
 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAG--VRR 265
           +AIIGRPNVGKSTL NR+LG++  +    P TTR  I        R+ V IDT G  +  
Sbjct: 48  VAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPRQIVFIDTPGLHIEE 107

Query: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFAL-NSGRSIVIAVN 324
           ++ IN  + + +      ++ D ++V+ VVD     +D ++ L         R  V+A+N
Sbjct: 108 QRAINRLMNRAAA----SSLADVSMVIFVVDGMTWTADDEMVLSKLRRGGEERKTVLAIN 163

Query: 325 KWDGLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEA 374
           K D +    KE +   L+       F  I  ISA  GT V  + E   E+
Sbjct: 164 KVDNIK--DKEALFPYLEEVAKKYPFDEILPISASKGTNVKRILEMAAES 211