Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) from Pseudomonas fluorescens FW300-N2E2

 Score = 53.9 bits (128), Expect = 7e-12
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 51/227 (22%)

Query: 78  VVKALDPQNGKVIWTTDLEIE----GSA---RLSGGITAAFGKLFIGSENGVVNALDAET 130
           VV ALD +NG++IW  D + +    G A    ++ G+    GK+++G  +G + A+DA T
Sbjct: 118 VVYALDARNGRLIWKYDPQSDRNRAGEACCDAVNRGVAVWRGKVYVGVLDGRLEAIDART 177

Query: 131 GEPLWASAIEGE------VLAAPAADNNIVIVNTS------RGALIALNQEDGAQKWTIS 178
           G+  W+     +      +  AP   N  V++         RG + A + E G Q W   
Sbjct: 178 GQRAWSVDTRADHSRSYTITGAPRVVNGKVVIGNGGAAFGVRGYVTAYDAETGKQAWRFY 237

Query: 179 TEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLV- 237
           T   +  L  + +  A+A   + G        A  E+G            G T  D    
Sbjct: 238 TVPGDPKLPPEDKAMAIAAKTWHGD-------AFVEQG-----------GGGTAWDSFAF 279

Query: 238 DVDASPLVIG---GTLFTVGFNGQ----------LIAIDLRSGQPIW 271
           D D + L IG   G+L+   +  Q          ++A++  +G+ +W
Sbjct: 280 DPDLNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW 326



 Score = 51.2 bits (121), Expect = 5e-11
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 26/140 (18%)

Query: 232 EIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDG------ 285
           ++DR   V+A+P+V+ G ++T G    + A+D R+G+ IWK +  S  + A +       
Sbjct: 94  DLDR--GVEATPIVVDGVMYTTGPFSVVYALDARNGRLIWKYDPQSDRNRAGEACCDAVN 151

Query: 286 -------SRLYLVTDKDHLVAVDTRSGTELWS-NTQLEH----RLLTAPKMIDDYLVVGD 333
                   ++Y+      L A+D R+G   WS +T+ +H     +  AP++++  +V+G+
Sbjct: 152 RGVAVWRGKVYVGVLDGRLEAIDARTGQRAWSVDTRADHSRSYTITGAPRVVNGKVVIGN 211

Query: 334 ------AEGYLHWIDRNSGE 347
                   GY+   D  +G+
Sbjct: 212 GGAAFGVRGYVTAYDAETGK 231



 Score = 43.9 bits (102), Expect = 8e-09
 Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 27/173 (15%)

Query: 69  KVFVASRDGVVKALDPQNGKVIWTTDLEIEGSA--RLSGGITAAFGKLFIGS------EN 120
           KV+V   DG ++A+D + G+  W+ D   + S    ++G      GK+ IG+        
Sbjct: 160 KVYVGVLDGRLEAIDARTGQRAWSVDTRADHSRSYTITGAPRVVNGKVVIGNGGAAFGVR 219

Query: 121 GVVNALDAETGEPLWA-SAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTIST 179
           G V A DAETG+  W    + G+    P      +   T  G    + Q  G   W    
Sbjct: 220 GYVTAYDAETGKQAWRFYTVPGDPKLPPEDKAMAIAAKTWHGDAF-VEQGGGGTAWDSFA 278

Query: 180 EVPNLTLRGDSRPTAVAGGVFWGTPSGR------------LAAAIAERGQLIW 220
             P+L L        V  G  W  P  R            + A  A+ G+ +W
Sbjct: 279 FDPDLNL----LYIGVGNGSLW-DPKWRSQAKGDNLFLSSIVAVNADTGEYVW 326



 Score = 37.7 bits (86), Expect = 5e-07
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 189 DSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGG 248
           ++ P  V G ++   P   + A  A  G+LIW+      +          V+    V  G
Sbjct: 100 EATPIVVDGVMYTTGPFSVVYALDARNGRLIWKYDPQSDRNRAGEACCDAVNRGVAVWRG 159

Query: 249 TLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHLV 298
            ++    +G+L AID R+GQ  W      + D   D SR Y +T    +V
Sbjct: 160 KVYVGVLDGRLEAIDARTGQRAW------SVDTRADHSRSYTITGAPRVV 203



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 197 GGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLF----- 251
           G V+ G   GRL A  A  GQ  W           +  R   +  +P V+ G +      
Sbjct: 159 GKVYVGVLDGRLEAIDARTGQRAWSVDT-----RADHSRSYTITGAPRVVNGKVVIGNGG 213

Query: 252 -TVGFNGQLIAIDLRSGQPIWK 272
              G  G + A D  +G+  W+
Sbjct: 214 AAFGVRGYVTAYDAETGKQAWR 235