Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) from Pseudomonas fluorescens FW300-N2E2

 Score = 57.8 bits (138), Expect = 1e-12
 Identities = 78/307 (25%), Positives = 122/307 (39%), Gaps = 78/307 (25%)

Query: 78  VVKALDPQNGKVIWTTDLEIE----GSA---RLSGGITAAFGKLFIGSENGVVNALDAET 130
           VV ALD +NGK+IW  D + +    G A    ++ G+    GK+++G  +G + A+DA+T
Sbjct: 120 VVYALDARNGKLIWKYDPQSDRNRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKT 179

Query: 131 GEPLWASAIEGE------VLAAPAADNNIVIVNTS------RGALIALNQEDGAQKWTIS 178
           G+  W+     +      +  AP   N  V++         RG + A + E G Q W   
Sbjct: 180 GQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKQAWRFY 239

Query: 179 TEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLV- 237
           T   +  L  + +  A+A   + G        A  E+G            G T  D    
Sbjct: 240 TVPGDPKLPPEDKGMAIAAKTWHGD-------AFVEQG-----------GGGTAWDSFAF 281

Query: 238 DVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHL 297
           D D + L IG     VG NG L         P W+            G  L+L      +
Sbjct: 282 DPDLNLLYIG-----VG-NGSL-------WDPKWRSQ--------AKGDNLFL----SSI 316

Query: 298 VAVDTRSGT----------ELWSNTQLEHRLLTAPKMID----DYLVVGDAEGYLHWIDR 343
           VAV+  +G           + W  T  +H +L A   ID      L+     G+ + IDR
Sbjct: 317 VAVNADTGEYVWHYQTTPGDAWDYTATQHMIL-AELPIDGKPRKVLMQAPKNGFFYVIDR 375

Query: 344 NSGEFIA 350
            +G+ ++
Sbjct: 376 ATGQLLS 382



 Score = 51.2 bits (121), Expect = 9e-11
 Identities = 35/140 (25%), Positives = 71/140 (50%), Gaps = 26/140 (18%)

Query: 232 EIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDG------ 285
           ++DR   V+A+P+V+ G ++T G    + A+D R+G+ IWK +  S  + A +       
Sbjct: 96  DLDR--GVEATPIVVDGVMYTTGPFSVVYALDARNGKLIWKYDPQSDRNRAGEACCDAVN 153

Query: 286 -------SRLYLVTDKDHLVAVDTRSGTELWS-NTQLEHR----LLTAPKMIDDYLVVGD 333
                   ++Y+      L A+D ++G   WS +T+ +H+    +  AP++++  +V+G+
Sbjct: 154 RGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGN 213

Query: 334 ------AEGYLHWIDRNSGE 347
                   GY+   D  +G+
Sbjct: 214 GGAEFGVRGYVTAYDAETGK 233



 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 60/247 (24%), Positives = 91/247 (36%), Gaps = 41/247 (16%)

Query: 69  KVFVASRDGVVKALDPQNGKVIWTTDLEIE--GSARLSGGITAAFGKLFIGS------EN 120
           KV+V   DG ++A+D + G+  W+ D   +   S  ++G      GK+ IG+        
Sbjct: 162 KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVR 221

Query: 121 GVVNALDAETGEPLWA-SAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTIST 179
           G V A DAETG+  W    + G+    P      +   T  G    + Q  G   W    
Sbjct: 222 GYVTAYDAETGKQAWRFYTVPGDPKLPPEDKGMAIAAKTWHGDAF-VEQGGGGTAWDSFA 280

Query: 180 EVPNLTLRGDSRPTAVAGGVFWGTPSGR------------LAAAIAERGQLIW--QQPVG 225
             P+L L        V  G  W  P  R            + A  A+ G+ +W  Q   G
Sbjct: 281 FDPDLNL----LYIGVGNGSLW-DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG 335

Query: 226 QPKGATEIDRLV----DVDASPLVIGGTLFTVGFNGQLIAIDLRSGQ-----PIWKRNYS 276
                T    ++     +D  P  +   L     NG    ID  +GQ      I  ++++
Sbjct: 336 DAWDYTATQHMILAELPIDGKPRKV---LMQAPKNGFFYVIDRATGQLLSAKGIVPQSWT 392

Query: 277 SATDMAT 283
              DM T
Sbjct: 393 KGMDMKT 399



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 161 GALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIW 220
           G LIA +       W    EVP +T+      +     VF G+  GR+ A  A+ G+ +W
Sbjct: 494 GKLIAWDPVKQQPAW----EVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGKKLW 549

Query: 221 QQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSG 267
           +QP      A  I   VD +     + G  +   F+    A+ LR+G
Sbjct: 550 EQPAASGVMAAPITYSVDGEQYVTFMAG--WGGAFSTFAGALSLRAG 594



 Score = 35.0 bits (79), Expect = 7e-06
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 189 DSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGG 248
           ++ P  V G ++   P   + A  A  G+LIW+      +          V+    V  G
Sbjct: 102 EATPIVVDGVMYTTGPFSVVYALDARNGKLIWKYDPQSDRNRAGEACCDAVNRGVAVWKG 161

Query: 249 TLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHLV 298
            ++    +G+L AID ++GQ  W      + D   D  R Y +T    +V
Sbjct: 162 KVYVGVLDGRLEAIDAKTGQRAW------SVDTRADHKRSYTITGAPRVV 205



 Score = 35.0 bits (79), Expect = 7e-06
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 77  GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKL-FIGSENGVVNALDAETGEPLW 135
           G + A DP   +  W    E+      +GG  +  G L F GS +G V A  A+TG+ LW
Sbjct: 494 GKLIAWDPVKQQPAW----EVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGKKLW 549

Query: 136 ASAIEGEVLAAP 147
                  V+AAP
Sbjct: 550 EQPAASGVMAAP 561



 Score = 28.1 bits (61), Expect = 8e-04
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 254 GFNGQLIAIDLRSGQPIWKRNYSSATD---MATDGSRLYLVTDKDHLVAVDTRSGTELW 309
           G++G+LIA D    QP W+  Y +  +   ++T G+ ++  +    ++A    +G +LW
Sbjct: 491 GWSGKLIAWDPVKQQPAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGKKLW 549