Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) from Pseudomonas fluorescens FW300-N1B4

 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 45/210 (21%)

Query: 83  DPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGE 142
           DP+N + + T  L ++G                  S    +N  + +   P+WA +  GE
Sbjct: 37  DPKNPEQVVTNGLGVQGQRY---------------SPLDTLNVDNVKDLRPVWAFSFGGE 81

Query: 143 VL----AAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRP------ 192
                 A P   + ++ +  S   + A++   G + W     +P+     D RP      
Sbjct: 82  KQRGQQAQPMIKDGVMYMTGSYSRVFAVDARTGRKLWQYDARLPD-----DIRPCCDVIN 136

Query: 193 --TAVAGG-VFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGT 249
              A+ G  V +GT   +L A   + G+++W + V   K          + A+PLVI G 
Sbjct: 137 RGVALYGDLVIFGTLDAKLVALNKDTGKVVWSKKVADHKEG------YSISAAPLVINGK 190

Query: 250 LFT------VGFNGQLIAIDLRSGQPIWKR 273
           L T       G  G++ A D ++G  +W R
Sbjct: 191 LITGVAGGEFGVVGKIEAYDPKNGSLLWSR 220



 Score = 47.0 bits (110), Expect = 1e-09
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 77  GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKL-FIGSENGVVNALDAETGEPLW 135
           GV++A+DP+ GK +W      +  A L GG+    G L F G+  G + A +A+TGE +W
Sbjct: 470 GVLRAIDPKTGKEVWRH----KNFAPLWGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVW 525

Query: 136 ASAIEGEVLAAP 147
                  VL +P
Sbjct: 526 EFQTGSGVLGSP 537



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 59/240 (24%), Positives = 87/240 (36%), Gaps = 49/240 (20%)

Query: 73  ASRDGVVKALDPQNGKVI----------WTTDLEIEG-----SARLSG-------GITAA 110
           A R+G    LD  NGK I          W + L+  G      A   G       G +  
Sbjct: 348 ADRNGFFYVLDRTNGKFIRGFPFVDKITWASGLDKNGRPIYNDASRPGAPGSEAKGSSVF 407

Query: 111 FGKLFIGSENGVVNALDAETG-----EPLWASAIEGEVLAAP------AADNNIVIVNTS 159
               F+G++N +  A + +TG        W   I  E +A         A   I  +N  
Sbjct: 408 VAPAFLGAKNWMPMAYNRDTGLFYVPSNEWGMDIWNEGIAYKKGAAFLGAGFTIKPLNED 467

Query: 160 R-GALIALNQEDGAQKWTISTEVPN----LTLRGDSRPTAVAGGVFWGTPSGRLAAAIAE 214
             G L A++ + G + W      P     LT +G+         VF GTP G L A  A+
Sbjct: 468 YIGVLRAIDPKTGKEVWRHKNFAPLWGGVLTTKGNL--------VFTGTPEGFLQAFNAK 519

Query: 215 RGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIA---IDLRSGQPIW 271
            G+ +W+   G     + I   +D +    V+ G    V   G  +A    D   G  +W
Sbjct: 520 TGEKVWEFQTGSGVLGSPITWEMDGEQYVSVLSGWGGAVPLWGGEVAKRVKDFNQGGMLW 579



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 22/104 (21%)

Query: 214 ERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTV-----GFNGQLIAIDLRSGQ 268
           E G  IW + +   KGA  +              G  FT+      + G L AID ++G+
Sbjct: 436 EWGMDIWNEGIAYKKGAAFL--------------GAGFTIKPLNEDYIGVLRAIDPKTGK 481

Query: 269 PIWK-RNYSSATD--MATDGSRLYLVTDKDHLVAVDTRSGTELW 309
            +W+ +N++      + T G+ ++  T +  L A + ++G ++W
Sbjct: 482 EVWRHKNFAPLWGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVW 525



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 40/163 (24%)

Query: 41  TPKTLWSASVGDGVGHYFSKLAPDYAYDKVF--VASRD----GVVKALDPQNGKVIWTTD 94
           T K +WS  V D    Y    AP     K+   VA  +    G ++A DP+NG ++W+  
Sbjct: 162 TGKVVWSKKVADHKEGYSISAAPLVINGKLITGVAGGEFGVVGKIEAYDPKNGSLLWSRP 221

Query: 95  LEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAP------A 148
             +EG      G     GK     ENG+      +T    W   +     AAP       
Sbjct: 222 -TVEGHM----GYVYKDGK---AVENGISGGEAGKT----WPGDLWKTGGAAPWLGGYYD 269

Query: 149 ADNNIVIVNTSRGA----------------LIALNQEDGAQKW 175
            + N+++  T   A                 +ALN +DG  KW
Sbjct: 270 PETNLLLFGTGNPAPWNSHLRPGDNLYSSSRLALNPDDGTIKW 312



 Score = 31.2 bits (69), Expect = 8e-05
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 268 QPIW-------KRNYSSATDMATDGSRLYLVTDKDHLVAVDTRSGTELWS-NTQLEHRLL 319
           +P+W       K+    A  M  DG  +Y+      + AVD R+G +LW  + +L   + 
Sbjct: 71  RPVWAFSFGGEKQRGQQAQPMIKDGV-MYMTGSYSRVFAVDARTGRKLWQYDARLPDDIR 129

Query: 320 TAPKMID-------DYLVVGDAEGYLHWIDRNSGEFIAQQLVND--SGFAV--GPLALND 368
               +I+       D ++ G  +  L  +++++G+ +  + V D   G+++   PL +N 
Sbjct: 130 PCCDVINRGVALYGDLVIFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSISAAPLVING 189

Query: 369 GYVIVTRNGQ 378
             +     G+
Sbjct: 190 KLITGVAGGE 199



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 68  DKVFVASRDGVVKALDPQNGKVIWTTDL-EIEGSARLSGGITAAFGKLF---IGSENGVV 123
           D V   + D  + AL+   GKV+W+  + + +    +S       GKL     G E GVV
Sbjct: 144 DLVIFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSISAAPLVINGKLITGVAGGEFGVV 203

Query: 124 ---NALDAETGEPLWA-SAIEGEV 143
               A D + G  LW+   +EG +
Sbjct: 204 GKIEAYDPKNGSLLWSRPTVEGHM 227