Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 592 a.a., PQQ-dependent dehydrogenase, methanol/ethanol family from Pseudomonas stutzeri RCH2

 Score = 45.4 bits (106), Expect = 4e-09
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 77  GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKL-FIGSENGVVNALDAETGEPLW 135
           GV++A+DP+ GK +W      +  A L GG+ A  G L F G+  G + A DA+TG+ L+
Sbjct: 471 GVLRAIDPKTGKEVW----RYKNYAPLWGGVLATKGNLVFTGNPEGYLMAFDAKTGKKLY 526

Query: 136 ASAIEGEVLAAP 147
                  V+ +P
Sbjct: 527 EFNTGSGVIGSP 538



 Score = 44.7 bits (104), Expect = 7e-09
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 24/198 (12%)

Query: 93  TDLEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGE---PLWASAIEGEVL----A 145
           TD EI   A+ +  I    G    G     ++AL+A       P+W  ++ GE      A
Sbjct: 30  TDQEILNDAKSTDQIVTN-GMGLQGQRYSTLDALNANNINQLRPVWGFSLGGEKQRGQEA 88

Query: 146 APAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGD---SRPTAVAGG-VFW 201
            P   + ++ +  S   + A++   G + W     +P+  +      +R  A+    V +
Sbjct: 89  QPLIKDGVMYITGSYSRVYAVDARTGKELWQYDARLPDGIMPCCDVINRGVALYDDLVIF 148

Query: 202 GTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFT------VGF 255
           GT   +L A   + G+++W++ V   K          + A+PL++ G L T       G 
Sbjct: 149 GTLDAKLVALNKDTGKVVWKKTVADYKAG------YSLTAAPLIVKGKLITGVSGGEFGV 202

Query: 256 NGQLIAIDLRSGQPIWKR 273
            G++ A + ++G+ +W R
Sbjct: 203 VGKIEAYNPKNGELLWTR 220



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 259 LIAIDLRSGQPIW-------KRNYSSATDMATDGSRLYLVTDKDHLVAVDTRSGTELWS- 310
           L A ++   +P+W       K+    A  +  DG  +Y+      + AVD R+G ELW  
Sbjct: 62  LNANNINQLRPVWGFSLGGEKQRGQEAQPLIKDGV-MYITGSYSRVYAVDARTGKELWQY 120

Query: 311 NTQLEHRLLTAPKMI-------DDYLVVGDAEGYLHWIDRNSGEFIAQQLVND 356
           + +L   ++    +I       DD ++ G  +  L  +++++G+ + ++ V D
Sbjct: 121 DARLPDGIMPCCDVINRGVALYDDLVIFGTLDAKLVALNKDTGKVVWKKTVAD 173



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 22/99 (22%)

Query: 219 IWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTV-----GFNGQLIAIDLRSGQPIWK- 272
           IW +     KGA  +              G  FT+      + G L AID ++G+ +W+ 
Sbjct: 442 IWNEGTAYKKGAAYL--------------GAGFTIHPLNDDYIGVLRAIDPKTGKEVWRY 487

Query: 273 RNYSSATD--MATDGSRLYLVTDKDHLVAVDTRSGTELW 309
           +NY+      +AT G+ ++    + +L+A D ++G +L+
Sbjct: 488 KNYAPLWGGVLATKGNLVFTGNPEGYLMAFDAKTGKKLY 526



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 21/180 (11%)

Query: 20  GCASEEENVIMAPLP---IVKSEFTPKTLWSASVGDGVGHYFSKLAPDYAYDKVFVASRD 76
           G A  ++ VI   L    +  ++ T K +W  +V D    Y    AP     K+      
Sbjct: 138 GVALYDDLVIFGTLDAKLVALNKDTGKVVWKKTVADYKAGYSLTAAPLIVKGKLITGVSG 197

Query: 77  GV------VKALDPQNGKVIWTTDLEIEG--------SARLSGGITAA-FGKLFIGS--E 119
           G       ++A +P+NG+++WT    +EG          ++  GI+    GK + G   +
Sbjct: 198 GEFGVVGKIEAYNPKNGELLWTRP-TVEGHMGYVWKDGKKVESGISGGEAGKTWPGDLWK 256

Query: 120 NGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTIST 179
            G          +P   S + G    AP   +     N    + +AL+  DG+ KW   T
Sbjct: 257 TGGAAPWLGGYYDPDTDSLLFGTGNPAPWNSHLRPGDNLYSSSRLALDPNDGSIKWHFQT 316