Pairwise Alignments
Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056
Subject, 710 a.a., PQQ-dependent dehydrogenase, methanol/ethanol family from Pseudomonas stutzeri RCH2
Score = 48.1 bits (113), Expect = 8e-10
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 238 DVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRN----------------YSSATDM 281
D+ +PLV+ G ++ VG + A D R+G+ +W+ + + +
Sbjct: 84 DIVGTPLVVDGVMYYVGEMNRTRAFDARTGKMLWEYDPQVSKEIIDNNMKKVFWKHNRGL 143
Query: 282 ATDGSRLYLVTDKDHLVAVDTRSGTELWSNTQLEH----RLLTAPKMIDDYLVVGDA--- 334
+T G +L++ T L+A+ + G E+W +H + PK D + VG+
Sbjct: 144 STYGDKLFIATWDGRLIAITRKDGKEVWQTRTFDHDQPLNITGHPKAFDGKVFVGNGGTE 203
Query: 335 ----EGYLHWIDRNSGE 347
GY+ D +G+
Sbjct: 204 LGPMRGYVTAYDTETGK 220
Score = 43.9 bits (102), Expect = 1e-08
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 68 DKVFVASRDGVVKALDPQNGKVIW-TTDLEIEGSARLSGGITAAFGKLFIGS-------E 119
DK+F+A+ DG + A+ ++GK +W T + + ++G A GK+F+G+
Sbjct: 148 DKLFIATWDGRLIAITRKDGKEVWQTRTFDHDQPLNITGHPKAFDGKVFVGNGGTELGPM 207
Query: 120 NGVVNALDAETGEPLW 135
G V A D ETG+ +W
Sbjct: 208 RGYVTAYDTETGKQVW 223
Score = 38.5 bits (88), Expect = 6e-07
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 77 GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWA 136
G ++A DP K +W + + S G +T A +F G +G++ A DA TG+ LW+
Sbjct: 472 GSLQAWDPVKNKRVWQVN---QKSPWGGGTLTTAGNLVFQGQPDGMLKAYDARTGDELWS 528
Query: 137 SAIEGEVLAAP 147
+ + A P
Sbjct: 529 YDVGLGISAPP 539
Score = 36.6 bits (83), Expect = 2e-06
Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 64/299 (21%)
Query: 112 GKLFIGSENGVVNALDAETGEPLWA--SAIEGEVLAAPAADNNI---------------- 153
G ++ E A DA TG+ LW + E++ DNN+
Sbjct: 94 GVMYYVGEMNRTRAFDARTGKMLWEYDPQVSKEII-----DNNMKKVFWKHNRGLSTYGD 148
Query: 154 -VIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPS------- 205
+ + T G LIA+ ++DG + W T + L P A G VF G
Sbjct: 149 KLFIATWDGRLIAITRKDGKEVWQTRTFDHDQPLNITGHPKAFDGKVFVGNGGTELGPMR 208
Query: 206 GRLAAAIAERGQLIWQQPV--GQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQL---I 260
G + A E G+ +W+ + G P E D ++ A G + G G
Sbjct: 209 GYVTAYDTETGKQVWRFYIVPGNPADGFE-DAAQEMAAKTWT--GRWWENGGGGNAWHGW 265
Query: 261 AIDLRSGQPIWKRNYSSATDMAT----DGSRLYLVTDKDHLVAVDTRSGTELWS------ 310
D + Q I+ ++ G L+L + +VAVD +G W
Sbjct: 266 TYDEKYNQLIFGTGNGGPWNIKVRSPDGGDNLFLCS----VVAVDADTGEYKWHVQTAPG 321
Query: 311 -----NTQLEHRLLTAPKMID----DYLVVGDAEGYLHWIDRNSGEFIAQQLVNDSGFA 360
N+ ++ ++ A ID D ++ G+ + IDR++G+ ++ + D+ ++
Sbjct: 322 DTWDYNSNMD--IVLADLKIDGKDVDAVLHAPKNGFFYTIDRSNGKVLSAEKFTDANWS 378
Score = 32.3 bits (72), Expect = 4e-05
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 159 SRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQL 218
SRG+L A + + W ++ + P G T VF G P G L A A G
Sbjct: 470 SRGSLQAWDPVKNKRVWQVNQKSP----WGGGTLTTAGNLVFQGQPDGMLKAYDARTGDE 525
Query: 219 IWQQPVGQPKGATEIDRLVD 238
+W VG A I +D
Sbjct: 526 LWSYDVGLGISAPPITYKLD 545
Score = 30.8 bits (68), Expect = 1e-04
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 80 KALDPQNGKVIWTTDLEIEGSA----------RLSGGITAAFGKLFIGSENGVVNALDAE 129
+A D + GK++W D ++ + + G++ KLFI + +G + A+ +
Sbjct: 106 RAFDARTGKMLWEYDPQVSKEIIDNNMKKVFWKHNRGLSTYGDKLFIATWDGRLIAITRK 165
Query: 130 TGEPLWAS----------------AIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQ 173
G+ +W + A +G+V N + RG + A + E G Q
Sbjct: 166 DGKEVWQTRTFDHDQPLNITGHPKAFDGKVFVG----NGGTELGPMRGYVTAYDTETGKQ 221
Query: 174 KW 175
W
Sbjct: 222 VW 223
Score = 27.7 bits (60), Expect = 0.001
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 257 GQLIAIDLRSGQPIWKRNYSS---ATDMATDGSRLYLVTDKDHLVAVDTRSGTELWS 310
G L A D + +W+ N S + T G+ ++ L A D R+G ELWS
Sbjct: 472 GSLQAWDPVKNKRVWQVNQKSPWGGGTLTTAGNLVFQGQPDGMLKAYDARTGDELWS 528
Score = 26.9 bits (58), Expect = 0.002
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 70 VFVASRDGVVKALDPQNGKVIWTTDLEIEGSA 101
VF DG++KA D + G +W+ D+ + SA
Sbjct: 506 VFQGQPDGMLKAYDARTGDELWSYDVGLGISA 537