Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) from Xanthomonas campestris pv. campestris strain 8004

 Score = 55.8 bits (133), Expect = 3e-12
 Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 46/261 (17%)

Query: 123 VNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVP 182
           +N   A T +P W     G++ A P+ +   + V    G L +++ + G   W       
Sbjct: 86  INRTTAPTLKPAWTLTTTGDISATPSVEGGTLYVPDWGGTLYSVDTQSGKPNWQAKLSDY 145

Query: 183 NLTLRGDSRPTAVAGG---VFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDV 239
                  +R T    G   +     SG + A   + G+L+W           E +    +
Sbjct: 146 TGNANSVTRNTPAISGKSIIVGDQASGTVMAIDKKTGKLLW-------SSVAESNPQARI 198

Query: 240 DASPLVIGGTLF---------------TVGFNGQLIAIDLRSGQPIWK-----RNYSSAT 279
            +SP++ G  ++               T  F G ++A+DL +G+ +W+       Y+ A+
Sbjct: 199 TSSPVIYGNRIYVGISSGDWGNLDATHTFTFRGSVVALDLNTGKKVWQFYNVPEGYTGAS 258

Query: 280 ---DMATD--GSRLYLVTDKDHLVAV-------DTRS--GTELWSNTQLEHRLLTAPKMI 325
               +A D    RLY  T  ++ +         + RS  G+EL    Q E   +     +
Sbjct: 259 VWGQVAIDPISRRLYFGTGNNYNIPAGVGNCVSNARSYRGSEL--TVQDELNCMAPDNYV 316

Query: 326 DDYLVVGDAEGYLHWIDRNSG 346
           D  + +    G L W DR  G
Sbjct: 317 DSVVALNLDTGKLAWADRAQG 337



 Score = 45.1 bits (105), Expect = 5e-09
 Identities = 91/446 (20%), Positives = 150/446 (33%), Gaps = 134/446 (30%)

Query: 43  KTLWSASVGDGVGHYFS--KLAPDYAYDKVFVASR-DGVVKALDPQNGKVIWTTDLEIEG 99
           K  W A + D  G+  S  +  P  +   + V  +  G V A+D + GK++W++  E   
Sbjct: 135 KPNWQAKLSDYTGNANSVTRNTPAISGKSIIVGDQASGTVMAIDKKTGKLLWSSVAESNP 194

Query: 100 SARLSGGITAAFGKLFIGSENG---------------VVNALDAETGEPLW--------- 135
            AR++        ++++G  +G                V ALD  TG+ +W         
Sbjct: 195 QARITSSPVIYGNRIYVGISSGDWGNLDATHTFTFRGSVVALDLNTGKKVWQFYNVPEGY 254

Query: 136 -ASAIEGEVLAAP-------------------------------------------AADN 151
             +++ G+V   P                                           A DN
Sbjct: 255 TGASVWGQVAIDPISRRLYFGTGNNYNIPAGVGNCVSNARSYRGSELTVQDELNCMAPDN 314

Query: 152 ---NIVIVNTSRGALIALNQEDGAQKWTIS------------TEVPNLT----------- 185
              ++V +N   G L   ++  G   W +S            T+  NLT           
Sbjct: 315 YVDSVVALNLDTGKLAWADRAQGYDAWNLSCIVAPTNGLCPNTQATNLTGPDYDFGGAGV 374

Query: 186 ----LRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQ--PKGATEIDRLVDV 239
               +  D +P  + G    G  SG   A  A  G  +W   VG     G  E     D 
Sbjct: 375 QLFTVWRDGKPQQLVGA---GQKSGIYWAFDARTGAKVWSTQVGPGGTTGGVEWGTAFDP 431

Query: 240 DASPLVIG-----------GTLFTVGFNG-QLIAIDLRSGQPIWKRNYSSATD------- 280
             S + +            G   TV  NG    A+D  +G+  W+               
Sbjct: 432 YKSQVYVAINNSSNATYTLGPDNTVSHNGGSWAALDAATGKIKWQVKVPGVNSVNPNVPA 491

Query: 281 -----MATDGSRLYLVTDKDHLVAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAE 335
                +    + LY  +   ++VA+DT +G  LW N      ++++P ++D  L  G   
Sbjct: 492 GGQGSLTVSPNLLYAGSMAGNMVALDTDTGATLW-NYNATGSVISSPAVVDGALYWGAGY 550

Query: 336 GYLHW-IDRNSGEFIAQQLVNDSGFA 360
           G  ++     S + I  + V DSG A
Sbjct: 551 GRFNFGTAATSNQLI--KFVPDSGAA 574



 Score = 41.2 bits (95), Expect = 8e-08
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 23/129 (17%)

Query: 70  VFVASRDGVVKALDPQNGKVIWTTDL-EIEGSAR-LSGGITAAFGK-LFIGSE-NGVVNA 125
           ++V    G + ++D Q+GK  W   L +  G+A  ++    A  GK + +G + +G V A
Sbjct: 117 LYVPDWGGTLYSVDTQSGKPNWQAKLSDYTGNANSVTRNTPAISGKSIIVGDQASGTVMA 176

Query: 126 LDAETGEPLWASAIE----GEVLAAPAADNNIVIVN---------------TSRGALIAL 166
           +D +TG+ LW+S  E      + ++P    N + V                T RG+++AL
Sbjct: 177 IDKKTGKLLWSSVAESNPQARITSSPVIYGNRIYVGISSGDWGNLDATHTFTFRGSVVAL 236

Query: 167 NQEDGAQKW 175
           +   G + W
Sbjct: 237 DLNTGKKVW 245