Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., outer membrane protein assembly complex subunit YfgL (RefSeq) from Shewanella amazonensis SB2B

 Score =  328 bits (840), Expect = 2e-94
 Identities = 163/394 (41%), Positives = 243/394 (61%), Gaps = 10/394 (2%)

Query: 1   MKKLFNQVLVAAGVLALLAGCASEE-ENVIMAPLPIVKSEFTPKTLWSASVGDGVGHYFS 59
           MK     +L A   LA+L+ C+S + E   ++ L  + +   P+  WSASVG GVG Y+S
Sbjct: 1   MKSWCKNLLAAGLSLAVLSACSSNDVEEDPVSELKELNATVFPEINWSASVGSGVGDYYS 60

Query: 60  KLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTD---------LEIEGSARLSGGITAA 110
           +L P   Y K+F A RDG+V A D  +G+ +W  D         L     ARL+ G+TAA
Sbjct: 61  RLRPAVEYGKIFAADRDGLVVAFDETSGEKLWEVDFSDLFKDRLLGKNKGARLASGMTAA 120

Query: 111 FGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQED 170
            GK+F+G E+G++ ALDAETG  +W+    GE+L+AP    N V+VN S G+L A + + 
Sbjct: 121 RGKVFVGGESGLLAALDAETGAVVWSVQASGELLSAPTVGENTVVVNASSGSLDAFDVDT 180

Query: 171 GAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGA 230
           G ++W+    +PNLTLRG      +AGG F GT  G++A  + + GQ  W+QP+  PKG 
Sbjct: 181 GEKRWSYENALPNLTLRGTGAAAFMAGGFFVGTADGKVAVVVKDNGQPAWEQPIYTPKGG 240

Query: 231 TEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYL 290
            E  R+ DVD +PL +G  L+ V +NG L+++++RSG+ +W R YSS  ++A  G +LYL
Sbjct: 241 NEFSRMADVDMTPLPVGDNLYAVSYNGNLVSMEMRSGRVLWTRKYSSFNELAASGVQLYL 300

Query: 291 VTDKDHLVAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIA 350
           V D   + A+D R+G ELWSN++L +R LT+P + D+YLVVGD EGYLH+IDRN G  + 
Sbjct: 301 VADSSRIYALDRRNGLELWSNSELANRELTSPVVFDNYLVVGDFEGYLHFIDRNDGSIVG 360

Query: 351 QQLVNDSGFAVGPLALNDGYVIVTRNGQIKKLTI 384
           +  V+  G    PL ++    +  R+G++ ++ +
Sbjct: 361 RIEVDSDGLYSQPLVVDGKIYVQGRSGKVARIAL 394