Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., Pyrrolo-quinoline quinone (NCBI) from Rhodospirillum rubrum S1H

 Score =  138 bits (347), Expect = 4e-37
 Identities = 94/351 (26%), Positives = 161/351 (45%), Gaps = 18/351 (5%)

Query: 45  LWSASVGDGVGHYFSKL--APDYAYDKVFVASRDGVVKALDPQNGKVIWTTDL-----EI 97
           LWS S+G G G    +L   P  A  ++F   R+  V+A + + GK +W   L     + 
Sbjct: 103 LWSTSIGAG-GTSRDRLLNGPVLADGRIFTIDREATVRAFNAETGKELWQAALPNRDDDE 161

Query: 98  EGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVN 157
           +  A L GG+    G++F  +    V AL A+TG+ LW + ++G + AAPA ++  V+V 
Sbjct: 162 DDGAFLGGGLAYDRGRIFASTGFAKVVALRADTGQELWRTEVDGPIRAAPAVNSGRVVVL 221

Query: 158 TSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQ 217
           T      AL+  DG + W+ S      T+ G   P    G V     SG L A   E G 
Sbjct: 222 TVDNQAFALSAVDGHKLWSHSGSPQTATILGAPTPAIDQGVVVIPYSSGELFALRLESGT 281

Query: 218 LIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSS 277
            IW   V   +       L D+ A+P+V    L+ +G +G ++ +DLRSG   W+   + 
Sbjct: 282 EIWSDAVTAVRRTDATGSLQDIRANPVVDANHLYVIGNSGLMVGMDLRSGARAWQLRVAG 341

Query: 278 ATDMATDGSRLYLVTDKDHLVAVDTRSGTELWSNTQLEHR---------LLTAPKMIDDY 328
                  G  L+L++ +  L AV+ ++G  +W+     +          L T P +  D 
Sbjct: 342 TQQPWLAGDVLFLISAEAELAAVNAKTGAVIWTTPLPRYESPDSLATPLLWTGPVLASDR 401

Query: 329 LVVGDAEGYLHWIDRNSGEFIAQQLVNDSGFAVGPLALNDGYVIVTRNGQI 379
           L++G ++   + +   +G+ + +  + D+  A  P+        +T  G++
Sbjct: 402 LIIGSSDASAYAVSPYTGKILGRIELPDA-MASAPIVAKGTLYFLTTTGEL 451



 Score = 51.2 bits (121), Expect = 6e-11
 Identities = 65/269 (24%), Positives = 106/269 (39%), Gaps = 57/269 (21%)

Query: 41  TPKTLWSASVGDGVGHYFSKLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIEGS 100
           T + LW   V   +     + AP     +V V + D    AL   +G  +W+     + +
Sbjct: 194 TGQELWRTEVDGPI-----RAAPAVNSGRVVVLTVDNQAFALSAVDGHKLWSHSGSPQ-T 247

Query: 101 ARLSGGITAAF--GKLFIGSENGVVNALDAETGEPLWASAIEG-----------EVLAAP 147
           A + G  T A   G + I   +G + AL  E+G  +W+ A+             ++ A P
Sbjct: 248 ATILGAPTPAIDQGVVVIPYSSGELFALRLESGTEIWSDAVTAVRRTDATGSLQDIRANP 307

Query: 148 AADNNIVIVNTSRGALIALNQEDGAQKWTI---STEVPNLT------LRGDSRPTAV--- 195
             D N + V  + G ++ ++   GA+ W +    T+ P L       +  ++   AV   
Sbjct: 308 VVDANHLYVIGNSGLMVGMDLRSGARAWQLRVAGTQQPWLAGDVLFLISAEAELAAVNAK 367

Query: 196 AGGVFWGTPSGRLAAAIAERGQLIWQQPV----------------------GQPKGATEI 233
            G V W TP  R  +  +    L+W  PV                      G+  G  E 
Sbjct: 368 TGAVIWTTPLPRYESPDSLATPLLWTGPVLASDRLIIGSSDASAYAVSPYTGKILGRIE- 426

Query: 234 DRLVDVDAS-PLVIGGTLFTVGFNGQLIA 261
             L D  AS P+V  GTL+ +   G+L+A
Sbjct: 427 --LPDAMASAPIVAKGTLYFLTTTGELVA 453