Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 724 a.a., PQQ-dependent dehydrogenase, methanol/ethanol family from Rhodopseudomonas palustris CGA009

 Score = 64.3 bits (155), Expect = 1e-14
 Identities = 88/352 (25%), Positives = 138/352 (39%), Gaps = 82/352 (23%)

Query: 46  WSASVGDGVGHYFSKLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSG 105
           WS S+G   G   + +  D     ++V +   VV A+D + GK +WT D +++ S    G
Sbjct: 106 WSYSLGSERGVEATPVVVDGI---MYVTASWSVVHAIDTRTGKKLWTFDPKVDHSKGYRG 162

Query: 106 -------GITAAFGKLFIGSENGVVNALDAETGEPLWA--SAIEGE----VLAAPAADNN 152
                  G+    GK+F+G+ +G + ALDA TG   W   + I+ E    +  AP   N 
Sbjct: 163 CCDVVNRGVALYKGKVFVGAYDGRLIALDAATGSKAWEIDTLIDHEHSYTITGAPRVFNG 222

Query: 153 IVIVNT------SRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSG 206
            V++        +RG + A + E G Q W   T VP                   G PS 
Sbjct: 223 KVVIGNGGAEYGARGYVTAYDAETGKQAWRWFT-VP-------------------GDPSK 262

Query: 207 RLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLF-TVGFNG--QLIAID 263
                  E+    W      P G   ++            GGT + T+ F+    LI + 
Sbjct: 263 PFEDESMEKAAKTW-----DPAGKWWLNG----------GGGTAWDTITFDPDLNLIYVG 307

Query: 264 LRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHLVAVDTRSGTELWSNTQLE----HRLL 319
             +G P W R+  S       G  LYL +    +VA++  +G  +W   +          
Sbjct: 308 TGNGSP-WNRHLRS----PAGGDNLYLAS----IVALNADTGKYVWHYQETPGDNWDYTS 358

Query: 320 TAPKMIDDYLVVG---------DAEGYLHWIDRNSGEFIAQQLVNDSGFAVG 362
           T P ++ D  + G            G+   IDR  G+FI+ +   D  +A G
Sbjct: 359 TQPMILADIAIDGKPRKVILHAPKNGFFFVIDRTDGKFISAKNFVDVNWATG 410



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 33/154 (21%)

Query: 218 LIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIW------ 271
           L W   +G  +G         V+A+P+V+ G ++       + AID R+G+ +W      
Sbjct: 104 LQWSYSLGSERG---------VEATPVVVDGIMYVTASWSVVHAIDTRTGKKLWTFDPKV 154

Query: 272 --KRNYSSATDMATDGSRLY-----LVTDKDHLVAVDTRSGTELWS-NTQLEHR----LL 319
              + Y    D+   G  LY     +      L+A+D  +G++ W  +T ++H     + 
Sbjct: 155 DHSKGYRGCCDVVNRGVALYKGKVFVGAYDGRLIALDAATGSKAWEIDTLIDHEHSYTIT 214

Query: 320 TAPKMIDDYLVVGD------AEGYLHWIDRNSGE 347
            AP++ +  +V+G+      A GY+   D  +G+
Sbjct: 215 GAPRVFNGKVVIGNGGAEYGARGYVTAYDAETGK 248



 Score = 38.5 bits (88), Expect = 6e-07
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 77  GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWA 136
           G + A DP   K +W  +     S    G +T A   +F G+ +G   A +A+TGE LW 
Sbjct: 504 GRLVAWDPVQQKEVWRAEYV---SPWNGGTLTTAGNLVFQGTADGRFVAYNAKTGEKLWE 560

Query: 137 SAIEGEVLAAPA 148
           S +    +AAPA
Sbjct: 561 SPLGTGAVAAPA 572



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 193 TAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVD 238
           T     VF GT  GR  A  A+ G+ +W+ P+G    A     +VD
Sbjct: 532 TTAGNLVFQGTADGRFVAYNAKTGEKLWESPLGTGAVAAPATYMVD 577