Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 801 a.a., PQQ-binding-like beta-propeller repeat protein from Parabacteroides merdae CL09T00C40

 Score = 72.8 bits (177), Expect = 3e-17
 Identities = 76/279 (27%), Positives = 117/279 (41%), Gaps = 35/279 (12%)

Query: 88  KVIWTTDLEIEGSARLSGGITAAFGKLFIGSEN------GVVNALDAETGEPLWASAIEG 141
           ++ WT +  +  +   S  + A  GK+++ S +      G + ALDA+TGE  W   +  
Sbjct: 453 RLAWTRN--VNANLYFSSPVVAG-GKVYVASLDEDLKGEGAIFALDAKTGELQWRYPVRN 509

Query: 142 EVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFW 201
            +    A D   V    + G L A++ + G  KW    +V  L +  D      A G+ +
Sbjct: 510 SIKNTIAVDEGTVFAQDAEGYLYAIDSQTGKLKWDKKMDVAGLPVLVDG--LTAANGIVY 567

Query: 202 GTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIA 261
                   A   + G  +W    G P+G  E      + A+ +VI G  +  GF G    
Sbjct: 568 AGSGKAFGAYNGKTGDAVWLNK-GWPQG--EATTSTPLLANGVVISGANWR-GFYGN--- 620

Query: 262 IDLRSGQPIWKRNYSSATDM----ATDGSRLYLVTDKDHLVAVDTRSG-----TELWSNT 312
            D ++G+ +WK +    TD     A DG+ LY VT +  L  +D  SG      EL  N 
Sbjct: 621 -DAQTGELLWKLDKDGITDRGATPAYDGNLLY-VTSRQSLFIIDCHSGEVIVRKELPFNV 678

Query: 313 QLEHRLLTAPKMI-----DDYLVVGDAEGY-LHWIDRNS 345
           Q+    L   K+I      D LV  D E + + W  R S
Sbjct: 679 QVNSTPLVTDKLIVFGTQTDGLVALDRETFEVRWKARTS 717



 Score = 69.7 bits (169), Expect = 3e-16
 Identities = 71/276 (25%), Positives = 116/276 (42%), Gaps = 67/276 (24%)

Query: 70  VFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGS----------- 118
           VF    +G + A+D Q GK+ W   +++ G   L  G+TAA G ++ GS           
Sbjct: 522 VFAQDAEGYLYAIDSQTGKLKWDKKMDVAGLPVLVDGLTAANGIVYAGSGKAFGAYNGKT 581

Query: 119 ----------------------ENGVV---------NALDAETGEPLWASAIEG--EVLA 145
                                  NGVV            DA+TGE LW    +G  +  A
Sbjct: 582 GDAVWLNKGWPQGEATTSTPLLANGVVISGANWRGFYGNDAQTGELLWKLDKDGITDRGA 641

Query: 146 APAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPS 205
            PA D N++ V TSR +L  ++   G  +  +  E+P   ++ +S P      + +GT +
Sbjct: 642 TPAYDGNLLYV-TSRQSLFIIDCHSG--EVIVRKELP-FNVQVNSTPLVTDKLIVFGTQT 697

Query: 206 GRLAAAIAERGQLIWQ----------QPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGF 255
             L A   E  ++ W+           P  +   AT       V+ SPL+IG T++    
Sbjct: 698 DGLVALDRETFEVRWKARTSPALVYTAPYSRHPAAT-------VETSPLLIGDTIYFGAS 750

Query: 256 NGQLIAIDLRSGQPIWKRNYSSA--TDMATDGSRLY 289
           +G +  ID  SGQ  WK    +   + ++T+G+ ++
Sbjct: 751 DGIIYGIDKESGQTTWKHKTGAPLFSTLSTNGNMIF 786



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 70  VFVASRDGVVKALDPQNGKVIW----------TTDLEIEGSARLSGGITAAFGKLFIGSE 119
           VF    DG+V ALD +  +V W          T       +A +          ++ G+ 
Sbjct: 692 VFGTQTDGLV-ALDRETFEVRWKARTSPALVYTAPYSRHPAATVETSPLLIGDTIYFGAS 750

Query: 120 NGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIA 165
           +G++  +D E+G+  W       + +  + + N++      G + A
Sbjct: 751 DGIIYGIDKESGQTTWKHKTGAPLFSTLSTNGNMIFATDFGGNVYA 796



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 271 WKRNYSSATDMATD---GSRLYLVT-DKD-----HLVAVDTRSGTELWSNTQLEHRLLTA 321
           W RN ++    ++    G ++Y+ + D+D      + A+D ++G   W    + + +   
Sbjct: 456 WTRNVNANLYFSSPVVAGGKVYVASLDEDLKGEGAIFALDAKTGELQW-RYPVRNSIKNT 514

Query: 322 PKMIDDYLVVGDAEGYLHWIDRNSGEFIAQQLVNDSGFAV 361
             + +  +   DAEGYL+ ID  +G+    + ++ +G  V
Sbjct: 515 IAVDEGTVFAQDAEGYLYAIDSQTGKLKWDKKMDVAGLPV 554