Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., putative quinoprotein from Phaeobacter inhibens DSM 17395

 Score =  109 bits (272), Expect = 2e-28
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 21/355 (5%)

Query: 42  PKTLWSASVGDGVGHYFSKLAPDYAYD-KVFVASRDGVVKALDPQNGKVIWTTDL----E 96
           P  +WS S+GDG        A     D +++       V A+ P  G + W ++L    +
Sbjct: 86  PNAIWSTSIGDGDSRRQRITATPVVGDGRIYTLDSGAKVSAVSPA-GALQWQSELLPASD 144

Query: 97  IEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIV 156
             G A   GG+    G L++ S  GV+ ALDA +G  +W   +E      P   + +V +
Sbjct: 145 SSGQAT-GGGLAYDGGVLYVSSGYGVLTALDAASGATIWRQELEATGSGQPTVRDGLVYL 203

Query: 157 NTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERG 216
                   A++ +DG   W +        + G   P   +    +   SG L A   + G
Sbjct: 204 VAGDDTGWAVHAKDGRIAWQVQATPSPSNILGAPAPAVTSDLAIFAFGSGDLTATFRKGG 263

Query: 217 QLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYS 276
              W   V   +    I R+ DV  +P+V G  ++    +G+  A DL SG  +W   + 
Sbjct: 264 LRRWNASVAGKRIGRTISRISDVTGAPVVSGNRMYVGNQSGRTAAFDLGSGDRLWTAPHG 323

Query: 277 SATDMATDGSRLYLVTDKDHLVAVDTRSGTELWSNTQLEHRLLTAPK------------M 324
           +   +      ++L++D   LV +D  SG  +W+ T L   L   P+            +
Sbjct: 324 AVDPVWAVAGNVFLISDLGQLVRLDADSGDAIWA-TNLPGYLKDKPRKRGAVVAHHGPVL 382

Query: 325 IDDYLVVGDAEGYLHWIDRNSGEFIAQQLVNDSGFAVGPLALNDGYVIVTRNGQI 379
               +V+   +G L +    SG  +    V   G +  P+  N    +V+  G++
Sbjct: 383 AGGQVVIASNDGLLRFFSPESGALLRSVAV-PGGASTAPVVANGTLYVVSTKGEL 436



 Score = 50.4 bits (119), Expect = 9e-11
 Identities = 63/271 (23%), Positives = 104/271 (38%), Gaps = 72/271 (26%)

Query: 13  GVLALLAGCASEEENVIMAPLPIVKSEFTPKTL----------------WSASV-GDGVG 55
           G +A          N++ AP P V S+                      W+ASV G  +G
Sbjct: 218 GRIAWQVQATPSPSNILGAPAPAVTSDLAIFAFGSGDLTATFRKGGLRRWNASVAGKRIG 277

Query: 56  HYFSKL-----APDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGITAA 110
              S++     AP  + ++++V ++ G   A D  +G  +WT      G+      + A 
Sbjct: 278 RTISRISDVTGAPVVSGNRMYVGNQSGRTAAFDLGSGDRLWTAP---HGAV---DPVWAV 331

Query: 111 FGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQED 170
            G +F+ S+ G +  LDA++G+ +WA+ + G +   P            RGA++A +   
Sbjct: 332 AGNVFLISDLGQLVRLDADSGDAIWATNLPGYLKDKPR----------KRGAVVAHHG-- 379

Query: 171 GAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGA 230
                                P    G V   +  G L     E G L+  + V  P GA
Sbjct: 380 ---------------------PVLAGGQVVIASNDGLLRFFSPESGALL--RSVAVPGGA 416

Query: 231 TEIDRLVDVDASPLVIGGTLFTVGFNGQLIA 261
           +          +P+V  GTL+ V   G+L A
Sbjct: 417 S---------TAPVVANGTLYVVSTKGELHA 438