Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., outer membrane protein assembly complex subunit YfgL (RefSeq) from Shewanella loihica PV-4

 Score =  334 bits (856), Expect = 3e-96
 Identities = 168/394 (42%), Positives = 246/394 (62%), Gaps = 10/394 (2%)

Query: 1   MKKLFNQVLVAAGVLALLAGCASEE-ENVIMAPLPIVKSEFTPKTLWSASVGDGVGHYFS 59
           MK     +L  +  L LL+ C+S + E   ++PLP +++   P+  WSASVG GVG Y+S
Sbjct: 1   MKSWCKTLLACSLSLGLLSACSSNDVEEEPVSPLPQIEASVFPEVSWSASVGSGVGDYYS 60

Query: 60  KLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEI---EGS------ARLSGGITAA 110
           K+ P   Y K+FV  R G V A D   G+ +W+ ++     EG+      ARLS GITAA
Sbjct: 61  KIRPAVRYGKLFVMDRYGEVAAYDEATGEQVWSLEISSWFKEGALSKNKGARLSSGITAA 120

Query: 111 FGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQED 170
             K+F G E+G++ A+DAETGE +W     GE+L+AP    ++V+V+TS GAL A N +D
Sbjct: 121 RNKVFFGGESGLLGAVDAETGEMVWHVTAGGELLSAPTVGEDVVVVHTSTGALEAYNVDD 180

Query: 171 GAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGA 230
           G Q W   +++P LTLRG       AGG F GT  G++A  +   GQ  W+QP+  PKG 
Sbjct: 181 GKQLWVYESKLPTLTLRGTGSAAYEAGGFFVGTADGKVAVVVKSNGQAAWEQPIYTPKGG 240

Query: 231 TEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYL 290
            E  R+ DVD  PL++G  ++ V +NG L++++LR+G+ +W R YSS  ++A+ G  LYL
Sbjct: 241 NEFTRMADVDMKPLIVGENIYAVSYNGNLVSMELRTGRVVWSRKYSSFNELASAGLNLYL 300

Query: 291 VTDKDHLVAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIA 350
           V D   + AVD R+G E WSN++L +R LT+P +  DYLVVGD EGYLH+IDR SG+ + 
Sbjct: 301 VDDHGRVYAVDKRNGLESWSNSELTNRELTSPVVFKDYLVVGDFEGYLHFIDRASGKLVG 360

Query: 351 QQLVNDSGFAVGPLALNDGYVIVTRNGQIKKLTI 384
           +  V+ SG    PL ++D   + +R G++ ++T+
Sbjct: 361 RVEVDSSGLFSQPLVIDDKIYVQSRGGKVARITL 394