Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., PQQ enzyme repeat domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  322 bits (825), Expect = 1e-92
 Identities = 163/394 (41%), Positives = 242/394 (61%), Gaps = 10/394 (2%)

Query: 1   MKKLFNQVLVAAGVLALLAGCASEE-ENVIMAPLPIVKSEFTPKTLWSASVGDGVGHYFS 59
           MK     +L A   LA+L+ C+S + E   ++ L  +++   P+  WSASVGDGVG Y+S
Sbjct: 1   MKSWCKNLLAAGLSLAMLSACSSSDVEEEPVSELTAIQATVFPEVSWSASVGDGVGDYYS 60

Query: 60  KLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIE---------GSARLSGGITAA 110
           +L P   Y K+F A R G V A D  +G+ +W  D   E           ARL+ GITAA
Sbjct: 61  RLTPAVRYGKIFAADRYGAVMAFDEASGEQVWRKDFSEEFRDNALAKNKGARLAAGITAA 120

Query: 111 FGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQED 170
             KLFIG E+G++ AL+AE G+ LW     GE+L+ P   +++V+V+TS G+L A N + 
Sbjct: 121 RNKLFIGGESGLLAALNAEDGQVLWHVIAGGELLSKPTVADDVVVVSTSSGSLEAYNVDT 180

Query: 171 GAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGA 230
           GA+ W    ++PNLTLRG       AGG F GT  G++A  +   GQ  W+Q +  P G 
Sbjct: 181 GAKLWVYDMQLPNLTLRGTGSAAYEAGGFFIGTADGKVAVVVKNNGQAAWEQAIYNPTGG 240

Query: 231 TEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYL 290
            E  R+ DVD +PL++G  L+ V +NG L++++LR+G+ IW R YSS  ++ T G  L+L
Sbjct: 241 NEFTRMADVDMTPLILGDNLYAVSYNGNLVSMELRTGRIIWTRKYSSFNELTTAGLSLFL 300

Query: 291 VTDKDHLVAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIA 350
           V D   + +VD R+G ELWSN++L +R LT+P++  DYLVVGD EGYLH+IDR++G  + 
Sbjct: 301 VDDHSRIYSVDRRNGLELWSNSELVNRTLTSPEVYKDYLVVGDFEGYLHFIDRSTGSIVG 360

Query: 351 QQLVNDSGFAVGPLALNDGYVIVTRNGQIKKLTI 384
           +  V+ SG    P+ ++D   +  R+G++  +T+
Sbjct: 361 RIQVDSSGLFSQPIVVDDKIYVQGRSGKLAVVTL 394