Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., outer membrane protein assembly complex subunit YfgL (RefSeq) from Shewanella sp. ANA-3

 Score =  321 bits (822), Expect = 3e-92
 Identities = 162/394 (41%), Positives = 241/394 (61%), Gaps = 10/394 (2%)

Query: 1   MKKLFNQVLVAAGVLALLAGCASEE-ENVIMAPLPIVKSEFTPKTLWSASVGDGVGHYFS 59
           MK     +L A   LA+L+ C+S + E   ++ L  +++   P+  WSASVGDGVG Y+S
Sbjct: 1   MKSWCKNLLAAGLSLAMLSACSSSDVEEEPVSELTAIQATVFPEVSWSASVGDGVGDYYS 60

Query: 60  KLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIE---------GSARLSGGITAA 110
           +L P   Y K+F A R G V A D   G+ +W  D   E           ARL+ G+TAA
Sbjct: 61  RLTPAVRYGKIFAADRYGEVVAFDEATGERVWKKDFSEEFRDNALAKNKGARLAAGVTAA 120

Query: 111 FGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQED 170
             K+F+G E+G++ AL+AE G+ LW     GE+L+ P   +++V+V+TS GAL A N + 
Sbjct: 121 RNKIFVGGESGLLAALNAEDGQVLWHVVTGGELLSKPTVADDVVVVSTSSGALEAFNVDT 180

Query: 171 GAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGA 230
           GA+ W    ++PNLTLRG       AGG F GT  G++A  +   GQ  W+Q +  P G 
Sbjct: 181 GAKLWAYEMQLPNLTLRGTGSAAYEAGGFFIGTADGKVAVVVKNNGQAAWEQAIYNPTGG 240

Query: 231 TEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYL 290
            E  R+ DVD +PL++G  L+ V +NG L++++LR+G+ IW R YSS  ++A+ G  L+L
Sbjct: 241 NEFTRMADVDMTPLILGDNLYAVSYNGNLVSMELRTGRVIWTRKYSSFNELASAGLSLFL 300

Query: 291 VTDKDHLVAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIA 350
           V D   + +VD R+G ELWSN++L +R LT+P +  DYLVVGD EGYLH+IDR++G  + 
Sbjct: 301 VDDHSRIYSVDRRNGLELWSNSELANRTLTSPAVYRDYLVVGDFEGYLHFIDRSTGSIVG 360

Query: 351 QQLVNDSGFAVGPLALNDGYVIVTRNGQIKKLTI 384
           +  V+ SG    PL ++D   +  R+G++  +T+
Sbjct: 361 RIQVDSSGLFSQPLVVDDKIYVQGRSGKLAVVTL 394