Pairwise Alignments

Query, 422 a.a., histidine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., histidyl-tRNA synthetase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  103 bits (257), Expect = 1e-26
 Identities = 106/454 (23%), Positives = 190/454 (41%), Gaps = 54/454 (11%)

Query: 9   RGMNDCLPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMY 68
           +G  D  P +      +   +++V   YG+ ++  P +EM    S  +G+  D  +K ++
Sbjct: 9   KGTRDFSPVEMAKRNYIFNTIRDVYHLYGFQQIETPSMEM---LSTLMGKYGDEGDKLLF 65

Query: 69  TFEDRNGDSLT------LRPEGTAGCVRSGIENGLLYNQEQ-----------------RL 105
             ++ +GD  +      L             E GL Y+                    + 
Sbjct: 66  KIQN-SGDYFSGITDEELLSRNAVKLASKFCEKGLRYDLTVPFARYVVMHRDEITFPFKR 124

Query: 106 WYMGPMFRHERPQKGRYRQFHQCGVEVFGLDGPDVDAELIMMTARLWRELGIAQHVRLE- 164
           + + P++R +RPQKGRYR+F+QC  +V G D    + EL+ +   ++    I   +++  
Sbjct: 125 YQIQPVWRADRPQKGRYREFYQCDADVVGSDSLLNEVELMQIVDTVFSRFNIRVCIKINN 184

Query: 165 ---LNSIGSLEARANY---RTALIDYLEQ--YQNVLDEDCKRRMYTN-------PLRVLD 209
              L+ I  +   A+     T  ID L++   +NV + + K +  ++       P+ +L 
Sbjct: 185 RKILSGIAEIIGEADKIVDITVAIDKLDKIGLENV-NAELKEKGISDEAIAKLQPIILLS 243

Query: 210 SKNPDVQAILGDAPQLSD--YLDAESKQHFAGLCELLDAAGIEYTVNQRLVRGLDYYNRT 267
             N +  A L      S+      E  +   G  E +     E  ++  L RGL+YY   
Sbjct: 244 GTNTEKLATLKSVLAASETGMKGVEESEFILGTLETMGLKN-EIELDLTLARGLNYYTGA 302

Query: 268 VFEWITESLGSQ-GTVCGGGRYDGLVEQLGGKPTPAVGFAMGLERL--VLMMETLGNTDV 324
           +FE   ++L  Q G++ GGGRYD L    G      VG + G +R+  VL    L   + 
Sbjct: 303 IFE--VKALDVQIGSITGGGRYDNLTGVFGMAGVSGVGISFGADRIFDVLNQLELYPKEA 360

Query: 325 RRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRADKVGAAIAL 384
               ++  V  G+      M +  ++R    G+R          KKQ   A+        
Sbjct: 361 VNGTELMFVNFGDKEAAFSMSMLAKVR--AAGIRAEIFPDAAKMKKQMSYANAKSVPFVA 418

Query: 385 VLGEDEVAAQTVVVKDLAGGEQNTVAQAEVAKLL 418
           ++GE+E+     ++K++  GEQN V+  E+   L
Sbjct: 419 IVGENEMNEGKAMLKNMETGEQNLVSVEELIAAL 452