Pairwise Alignments

Query, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Synechococcus elongatus PCC 7942

 Score =  233 bits (594), Expect = 7e-66
 Identities = 144/387 (37%), Positives = 227/387 (58%), Gaps = 36/387 (9%)

Query: 4   QHESPIKRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRV 63
           + ++ I RRP+  + VGD+ IG   P+ VQSM N  T D+  +VA I+ L ++G +IVRV
Sbjct: 13  EFDTVIHRRPTRSVRVGDIWIGSRHPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRV 72

Query: 64  SVPTMEAAEAFKLIKQQVS-----VPLVADIHFD-YRIALKVAEYGVDCLRINPG----- 112
           +VP++  A+A   IK+++      VPLVAD+H +  +IAL+VA++ VD +RINPG     
Sbjct: 73  TVPSLGHAKAVGDIKKKLQDTYRDVPLVADVHHNGMKIALEVAKH-VDKVRINPGLYVFE 131

Query: 113 ---------------NIGNEAR--IRSVVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPT 155
                           IG + R  +  +V   R++   +RIGVN GSL + +   YG+ T
Sbjct: 132 KPDPNRQGYTPEEFERIGKQIRDTLEPLVTSLREQDKAMRIGVNHGSLAERMLFTYGD-T 190

Query: 156 PEALVESAMRHVDILDRLNFDQFKVSVKASDVFLAVDSYRLLAKKIDQ-----PLHLGIT 210
           PE +VESA+  + + + ++F    +S+KAS   + + +YRL+AK++D      PLHLG+T
Sbjct: 191 PEGMVESALEFLRLCEEMDFRNLVISMKASRAPVMMAAYRLMAKRMDDLGMDYPLHLGVT 250

Query: 211 EAGGARAGSVKSAVGLGMLLAEGIGDTLRISLAADPVEEIKVGFDILKSLRIRSRGINFI 270
           EAG    G +KS VG+G LLAEGIGDT+R+SL   P  EI V + IL++L +R   + ++
Sbjct: 251 EAGDGDYGRIKSTVGIGTLLAEGIGDTIRVSLTEAPENEIPVCYSILQALGLRKTMVEYV 310

Query: 271 ACPSCSRQEFDVIGTVNALEQRLEDVLTPMDVSIIGCVVNGPGEAEVSHLGLAGSNKKSA 330
           ACPSC R  F++   ++ + +   + L  +D++++GC+VNGPGE   +  G  G    + 
Sbjct: 311 ACPSCGRTLFNLEEVLHKV-RAATNHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGTI 369

Query: 331 FYEDGVRQKERFDNDDLVAQLEAKIRA 357
               G  + +R   +  V +L   I+A
Sbjct: 370 ALYRGRDEIKRVPEEQGVEELINLIKA 396