Pairwise Alignments

Query, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Sinorhizobium meliloti 1021

 Score =  181 bits (460), Expect = 2e-50
 Identities = 124/361 (34%), Positives = 191/361 (52%), Gaps = 48/361 (13%)

Query: 8   PIKRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPT 67
           P  RR S  + VG V +G GAP+ VQSMTNT T D+ ATVAQ+ +L K G+++VR++V  
Sbjct: 9   PQPRRASVAVDVGGVIVGGGAPVVVQSMTNTDTADIDATVAQVAALHKAGSELVRITVDR 68

Query: 68  MEAAEAF-----KLIKQQVSVPLVADIHFDYRIALKVAEYGVDCL---RINPGNIG---- 115
            E+A A      +L++  + VPLV D H+     L       + L   RINPGN+G    
Sbjct: 69  DESAAAVPKIRERLLRLGIDVPLVGDFHYIGHKLLADHPACAEALAKYRINPGNVGFKDK 128

Query: 116 NEARIRSVVDCARDKGIPIRIGVNGGSLEKDLQLKY-------GEPTP------EALVES 162
            + +   +++ A     P+RIGVN GSL+++L  +        G P        E +V+S
Sbjct: 129 KDKQFAEIIEMAIRYDKPVRIGVNWGSLDQELLTRLMDANQANGSPLTAQQVMRETIVQS 188

Query: 163 AMRHVDILDRLNFDQFKV--SVKASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSV 220
           A+   ++ + L   + ++  S K S V   +  Y +LA +    LHLG+TEAG    G V
Sbjct: 189 ALLSAELAEELGLPRSRIILSAKVSGVQDLIAVYAMLAARSVHALHLGLTEAGMGTKGIV 248

Query: 221 KSAVGLGMLLAEGIGDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFIACPSCS 276
            S+  LG+L+ +GIGDT+RISL  +P      E++V  ++L+ +  R       ACP C 
Sbjct: 249 ASSASLGILMQQGIGDTIRISLTPEPGGDRTREVQVAQELLQVMGFRQFIPVVAACPGCG 308

Query: 277 RQEFDVIGTVNALEQRL-EDVLTPM-------------DVSIIGCVVNGPGEAEVSHLGL 322
           R    V      L Q++ ED+   M              V+++GC+VNGPGE++ + +G+
Sbjct: 309 RTTSTVF---QELAQKIQEDIRASMPVWREKYPGVEALKVAVMGCIVNGPGESKHADIGI 365

Query: 323 A 323
           +
Sbjct: 366 S 366