Pairwise Alignments

Query, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  626 bits (1614), Expect = 0.0
 Identities = 323/374 (86%), Positives = 347/374 (92%), Gaps = 2/374 (0%)

Query: 3   MQHESPIKRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVR 62
           M +E+PIKRRPSTRIYVG+VPIGDGAPIAVQSMTNTRTTDVAATVAQI++LE VGADIVR
Sbjct: 1   MFNENPIKRRPSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVAATVAQIRALENVGADIVR 60

Query: 63  VSVPTMEAAEAFKLIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEARIRS 122
           VSVPTM+AAEAF+ IKQQV VPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNE RIR+
Sbjct: 61  VSVPTMDAAEAFRQIKQQVKVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRA 120

Query: 123 VVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFKVSV 182
           VVDCARDK IPIRIGVNGGSLEKDL  KY EPTPEAL+ESAMRHVDILDRLNFDQFKVSV
Sbjct: 121 VVDCARDKNIPIRIGVNGGSLEKDLMDKYKEPTPEALLESAMRHVDILDRLNFDQFKVSV 180

Query: 183 KASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSVKSAVGLGMLLAEGIGDTLRISL 242
           KASDVFLAV+SYRLLAK+I QPLHLGITEAGGARAG+VKSAVGLGMLLAEGIGDTLRISL
Sbjct: 181 KASDVFLAVESYRLLAKQIKQPLHLGITEAGGARAGAVKSAVGLGMLLAEGIGDTLRISL 240

Query: 243 AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIGTVNALEQRLEDVLTPMDV 302
           AADPVEE+KVGFDILKSLRIRSRGINFIACPSCSRQEFDVI TVN LE+RLEDV T MDV
Sbjct: 241 AADPVEEVKVGFDILKSLRIRSRGINFIACPSCSRQEFDVISTVNELERRLEDVTTAMDV 300

Query: 303 SIIGCVVNGPGEAEVSHLGLAGSNKKSAFYEDGVRQKERFDNDDLVAQLEAKIRAKAARL 362
           SIIGCVVNGPGEA VSHLGLAG +KKS +Y+DG+RQKERFDND+LV  LEAKIRAKA+ +
Sbjct: 301 SIIGCVVNGPGEALVSHLGLAGGHKKSGYYDDGIRQKERFDNDNLVDALEAKIRAKASLM 360

Query: 363 DEKNRIDIKHVEQD 376
              NRI ++  + D
Sbjct: 361 --ANRIPVQEGDAD 372