Pairwise Alignments

Query, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  622 bits (1604), Expect = 0.0
 Identities = 318/363 (87%), Positives = 339/363 (93%)

Query: 3   MQHESPIKRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVR 62
           M +ESPI RRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDV ATVAQI++LE VGADIVR
Sbjct: 1   MYNESPIIRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVEATVAQIRALENVGADIVR 60

Query: 63  VSVPTMEAAEAFKLIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEARIRS 122
           VSVPTM+AAEAFK+IKQQ  VPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNE RIRS
Sbjct: 61  VSVPTMDAAEAFKVIKQQTKVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRS 120

Query: 123 VVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFKVSV 182
           VV+CARDK IPIRIGVNGGSLEKDL  KY EPTP+AL+ESAMRHVDILDRLNFDQFKVSV
Sbjct: 121 VVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTPQALLESAMRHVDILDRLNFDQFKVSV 180

Query: 183 KASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSVKSAVGLGMLLAEGIGDTLRISL 242
           KASDVFLAV+SYRLLAK+I QPLHLGITEAGGARAG+VKSAVGLGMLLAEGIGDTLRISL
Sbjct: 181 KASDVFLAVESYRLLAKQIKQPLHLGITEAGGARAGAVKSAVGLGMLLAEGIGDTLRISL 240

Query: 243 AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIGTVNALEQRLEDVLTPMDV 302
           AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVI TVN LE+RLEDV+TPMDV
Sbjct: 241 AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIATVNELERRLEDVVTPMDV 300

Query: 303 SIIGCVVNGPGEAEVSHLGLAGSNKKSAFYEDGVRQKERFDNDDLVAQLEAKIRAKAARL 362
           SIIGCVVNGPGEA VS +GL G N+KS +Y+DGVRQKERFDN+ +V QLEAKIRAK A +
Sbjct: 301 SIIGCVVNGPGEALVSDIGLTGGNRKSGYYDDGVRQKERFDNEHIVDQLEAKIRAKVASV 360

Query: 363 DEK 365
           D +
Sbjct: 361 DAR 363