Pairwise Alignments

Query, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  623 bits (1607), Expect = 0.0
 Identities = 321/369 (86%), Positives = 345/369 (93%), Gaps = 2/369 (0%)

Query: 3   MQHESPIKRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVR 62
           M +E+PIKRRPSTRIYVG+VPIGDGAPIAVQSMTNT+TTDV ATVAQI++LEKVGADIVR
Sbjct: 1   MYNETPIKRRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVR 60

Query: 63  VSVPTMEAAEAFKLIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEARIRS 122
           VSVPTM+AAEAFKLIKQ VSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNE RIRS
Sbjct: 61  VSVPTMDAAEAFKLIKQSVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRS 120

Query: 123 VVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFKVSV 182
           VV+CARDK IPIRIGVNGGSLEKDL  KY EPTPEAL+ESAMRHVDILDRLNFDQFKVSV
Sbjct: 121 VVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTPEALLESAMRHVDILDRLNFDQFKVSV 180

Query: 183 KASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSVKSAVGLGMLLAEGIGDTLRISL 242
           KASDVFLAV+SYRLLAK+I QPLHLGITEAGGARAG+VKSAVGLGMLLAEGIGDTLRISL
Sbjct: 181 KASDVFLAVESYRLLAKQIRQPLHLGITEAGGARAGAVKSAVGLGMLLAEGIGDTLRISL 240

Query: 243 AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIGTVNALEQRLEDVLTPMDV 302
           AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVI TVN LE+RLEDV T MDV
Sbjct: 241 AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVISTVNELERRLEDVTTAMDV 300

Query: 303 SIIGCVVNGPGEAEVSHLGLAGSNKKSAFYEDGVRQKERFDNDDLVAQLEAKIRAKAARL 362
           SIIGCVVNGPGEA VSH+GL G ++KS +Y++G RQKERFDND+LV  LEAKIRAKA+++
Sbjct: 301 SIIGCVVNGPGEALVSHIGLTGGHRKSGYYDEGERQKERFDNDNLVDSLEAKIRAKASQM 360

Query: 363 DEKNRIDIK 371
              NRI +K
Sbjct: 361 --ANRIQVK 367