Pairwise Alignments

Query, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., GcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  164 bits (416), Expect = 5e-45
 Identities = 106/285 (37%), Positives = 156/285 (54%), Gaps = 34/285 (11%)

Query: 11  RRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPTMEA 70
           RR ++ + +G VP+G   PI +QSMTNT T D  A V Q K +   G + VR++   ++ 
Sbjct: 8   RRETSEVNIGAVPLGGPNPIRIQSMTNTSTMDTEACVEQAKRIVDAGGEYVRLTTQGVKE 67

Query: 71  AEAFKLIK-----QQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEARIRSVVD 125
           AE    I      Q   VPLVAD+HF+ ++A   A+Y  + +RINPGN  + AR    ++
Sbjct: 68  AENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQYA-EKVRINPGNYVDAARTFKKLE 126

Query: 126 CA-----------RDKGIP-----------IRIGVNGGSLEKDLQLKYGEPTPEALVESA 163
                         D+ +P           IRIGVN GSL   +  +YG+ TPE +VES 
Sbjct: 127 YTDEEYAQEIQKIHDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGD-TPEGMVESC 185

Query: 164 MRHVDILDRLNFDQFKVSVKASDVFLAVDSYRLLAKKIDQ-----PLHLGITEAGGARAG 218
           M  + I    +F    +S+KAS+  + V + RLL   ++Q     PLHLG+TEAG    G
Sbjct: 186 MEFLRICVAEHFTDVVISIKASNTVVMVKTVRLLVAVMEQEGMSFPLHLGVTEAGDGEDG 245

Query: 219 SVKSAVGLGMLLAEGIGDTLRISLAADPVEEIKVGFDILKSLRIR 263
            +KSA+G+G LL +G+GDT+R+SL+  P  EI V   ++  + +R
Sbjct: 246 RIKSALGIGALLCDGLGDTIRVSLSEAPEAEIPVARKLVDYVLLR 290



 Score = 62.8 bits (151), Expect = 3e-14
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 8/149 (5%)

Query: 220 VKSAVGLGMLLAEGIGDTLRI----SLAADPVEEIKVGFDILKSLRIRSRGINFIACPSC 275
           +KSAV +G L+ +G+ D + +    SL+   V+     F IL++ R R+    +I+CP C
Sbjct: 467 IKSAVDMGALIFDGLCDGIFLFNQGSLSHAVVDA--TAFGILQAGRTRTSKTEYISCPGC 524

Query: 276 SRQEFDVIGTVNALEQRLEDVLTPMDVSIIGCVVNGPGEAEVSHLGLAGSNK-KSAFYED 334
            R  +D+  T+  ++      L  + + I+GC+VNGPGE   +  G  G+ + K + Y+ 
Sbjct: 525 GRTLYDLEKTIARIKAATSH-LKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKG 583

Query: 335 GVRQKERFDNDDLVAQLEAKIRAKAARLD 363
            V  ++    ++ V +L   IR     L+
Sbjct: 584 KVCVEKNIPEEEAVERLLEFIRNDRKELE 612