Pairwise Alignments

Query, 360 a.a., cytoskeleton protein RodZ from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  177 bits (448), Expect = 5e-49
 Identities = 108/334 (32%), Positives = 181/334 (54%), Gaps = 29/334 (8%)

Query: 28  GTLLKQKREDLGLTQRQIADRLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIR 87
           G  LK  RE   +T   +A++L LR SI+Q +E + +++   AT+ +GY+++YA+ +G+ 
Sbjct: 24  GQWLKAARESRQMTLASVAEQLNLRPSIVQDLEADNYDNIASATYVKGYVKNYARILGLE 83

Query: 88  ESEILCAFDDSYCQKPEVQ-PDMKSFSKKTKRQLHDSRIMLITWVILAVIVGMSTLWWWQ 146
            +++     +S+   P V  P M+SFS+KT RQ  D R+ML+T++I+ V++ +  LWW  
Sbjct: 84  MAKVDAYLAESF---PVVSAPTMQSFSRKTTRQARDGRLMLVTYLIIFVLLALLVLWW-- 138

Query: 147 NSQKNSLIPDKTTIAPSAISDIQSSNDASLANEDFATVPPLNELQDAAPASEEAPMSQES 206
             QK++++ D     PS               E+ A +  L       PAS E  ++Q+ 
Sbjct: 139 -VQKSAMVADLDLSKPSV--------------EETAELSTL-------PASSEPMLAQDP 176

Query: 207 LSGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPVAAAPVTQPEA 266
            +G   E+          V+D+ V ++T A     AQ  G+          + P T    
Sbjct: 177 QAGTGIEMPREQAAPDQTVSDQAVPDQTMAEESTSAQLTGEQAEDLAPEAGSTPETGVAL 236

Query: 267 APSAPSQPVSSSTESAS-ALLVMNFSADCWIQVKDATGKTLSTGVKKAGQSVSLSGQRPY 325
             +  +     + +SA  A+L ++ S DCWI+V DA GK L  G+K AG+ +++ GQ P+
Sbjct: 237 EVTNQNSQADEALKSADDAVLALSLSGDCWIKVTDADGKVLVNGLKLAGKEMNVFGQAPF 296

Query: 326 KLVLGAPEGVSITLASEPVDLSGYTSGKVARLTL 359
           K++LGAP+ +++ L  E VDL+ Y SG+VARLT+
Sbjct: 297 KVILGAPQSLTMRLNGEQVDLAKYPSGRVARLTV 330