Pairwise Alignments

Query, 360 a.a., cytoskeleton protein RodZ from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  149 bits (377), Expect = 9e-41
 Identities = 103/363 (28%), Positives = 171/363 (47%), Gaps = 41/363 (11%)

Query: 25  VAPGTLLKQKREDLGLTQRQIADRLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAV 84
           V  G++LK  RE +GL+  Q A +L LR  I++++E + F +   +T+ RGY+++YA+ +
Sbjct: 24  VTLGSVLKSAREQMGLSIAQTAVKLHLRPGIVENLEADDFSNIASSTYVRGYVKNYARML 83

Query: 85  GIRESEILCAFDDSYCQKPEV-QPDMKSFSKKTKRQLHDSRIMLITWVILAVIVGMSTLW 143
           G+  + I         Q P V QP M+SFS+KT  Q  D+++  +++ I+ V++G+  +W
Sbjct: 84  GVDNALIEACLAR---QVPFVTQPPMQSFSRKTTYQARDTKLKWLSFFIVIVLLGLFVVW 140

Query: 144 WWQNSQ-----------------KNSLIPDKT----TIAPSAISDI----QSSNDASLAN 178
           W Q +                   N  +P       T A + +S+I      + D  + +
Sbjct: 141 WMQRATLVTHVDISKPTAEEVAAANQTLPGDVLLTETDASARLSEIAVNGSMATDGPVKD 200

Query: 179 EDFATVPPLNELQDAAPASEEAPMSQESLSGEASELTPPAPNEADVVTDKPVVEETAAAP 238
            D +++ P   +  A    + A  S ES     ++     PN+    +       T A  
Sbjct: 201 TDVSSIDPNTNVMTAMEGEQTANSSNESSRNSVAK-----PNQTVTASGAVQTPSTTATV 255

Query: 239 VAPAQPQGQTPVQSQAPVAAAPVTQPEAAPSAPSQPVSSSTESASALLVMNFSADCWIQV 298
             P Q       Q  A  +A  VT P             ST      L +  + DCWI +
Sbjct: 256 TVPVQNTASAQTQVTANASATNVTSPTTNAQTMPAVAGQST------LNIQLTGDCWINI 309

Query: 299 KDATGKTLSTGVKKAGQSVSLSGQRPYKLVLGAPEGV-SITLASEPVDLSGYTSGKVARL 357
            DA GK +  GV+ AG ++  SG  P+K++LGAP  V S T+  + + L+ +  G+VARL
Sbjct: 310 VDANGKAIVDGVRGAGANIQASGVLPFKVILGAPTVVSSFTVDGKAISLAEFPKGRVARL 369

Query: 358 TLP 360
           T+P
Sbjct: 370 TIP 372