Pairwise Alignments

Query, 360 a.a., cytoskeleton protein RodZ from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., helix-turn-helix DNA-binding protein from Caulobacter crescentus NA1000

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 83/316 (26%), Positives = 127/316 (40%), Gaps = 38/316 (12%)

Query: 7   DYNQTETTEQVNQPAIEKVAP-GTLLKQKREDLGLTQRQIADRLRLRLSIIQSIEENRFE 65
           D +  E    V QP++E  A  G  LK  RE  GLT + +AD  R+R S I+++E+ R +
Sbjct: 16  DADTDEAPIAVGQPSLEDGADIGLALKAAREFRGLTTQDVADGTRIRQSYIEALEDMRLD 75

Query: 66  DGQVATFTRGYLRSYAKAVGIRESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRI 125
           D     FT GY+R+YA  +G+     +  F +     P+   +++  +    R+  D R+
Sbjct: 76  DLPSRPFTIGYVRAYAGLLGLDAEAAVARFKN---DAPDEGAELR--APVGVRRERDPRL 130

Query: 126 MLITWVILAVIVGMSTLWWWQNSQKNSLIPDK--TTIAPSAISDIQSSNDASLANEDFAT 183
            LI +    ++VG   LW   N  + ++  D+    IAP +         A +      T
Sbjct: 131 ALI-FAGGLLVVGAILLW---NVAQRAISKDEPPPQIAPES---------AQVRVAHGGT 177

Query: 184 VPPLNELQDAAPASEEAPMSQESLSGEASE---LTPPAPNEADVVTDKPVVEETAAAPVA 240
           V P   +   AP     P   ES + E  +   L   A N   V   K   +  A A  A
Sbjct: 178 VGPGGSVSLGAP----LPAPVESTTPEPYKTPGLDDAAANGGSVDAAKLAAKARAEAEAA 233

Query: 241 PAQPQGQTPVQSQAPVAA--APVTQPEAAPSAPSQPVSSSTESASALLVMNFSADC---- 294
                G T   +Q  + A   P  Q   A +A +  V      A AL V           
Sbjct: 234 ----AGITDTTNQVVIGAPFKPKGQMLGAGAAEASGVLIQARKAGALTVRRADGGIHMTR 289

Query: 295 WIQVKDATGKTLSTGV 310
           W+   DA     + G+
Sbjct: 290 WLSAGDAYSAPRTPGL 305