Pairwise Alignments

Query, 373 a.a., bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., radical SAM enzyme, Cfr family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  288 bits (736), Expect = 2e-82
 Identities = 153/339 (45%), Positives = 211/339 (62%), Gaps = 10/339 (2%)

Query: 30  RAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV- 88
           R  Q+ +W+Y  G  DF+ M N+ K  R  L  + EI  P V     S DGT K+ +R+ 
Sbjct: 63  RVNQIWQWLYERGVRDFNDMTNLAKPYRALLADQFEIAVPEVVSRHVSEDGTRKYLVRIA 122

Query: 89  GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREI 148
           G  +VE VYIPE+DR TLCVSSQVGC L C FC T  Q   RNL   EI+GQ+  A  ++
Sbjct: 123 GGHEVEVVYIPEEDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDL 182

Query: 149 GLEKETGRRP------ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTS 202
           G     GR P      ++N+V+MGMGEPL N + +  A++I +D  G  LS+RR+T+STS
Sbjct: 183 GEWPLPGRNPKNETRLLSNIVLMGMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTS 242

Query: 203 GVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRG 262
           GVV  + +   +I   LA+S HA  D++R +++PIN RWNI   L+ +R Y  +SN+ R 
Sbjct: 243 GVVPEIARTAEEIGCMLAVSFHATTDEVRDKLVPINKRWNIATLLDALRDYPKASNSER- 301

Query: 263 KVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKT 322
            +T EYV+L  VND  E A  L EL+KG P KINLIPFN +PG+PY++ SN+RI  F   
Sbjct: 302 -ITFEYVMLKGVNDSDEDARRLVELIKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADI 360

Query: 323 LMQYEHTVTIRKTRGDDIDAACGQLVGDVIDRTKRTKAK 361
           + +  +   IR  RG+DI AACGQL     +R ++++A+
Sbjct: 361 IYKAGYASPIRTPRGEDIMAACGQL-KSATERARKSRAQ 398