Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  196 bits (498), Expect = 2e-54
 Identities = 110/303 (36%), Positives = 179/303 (59%), Gaps = 6/303 (1%)

Query: 2   FQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPAN 61
           F+++     I FMR        S+V+  AS+       LN+G+DF GGT++EV  +   +
Sbjct: 528 FRLVPDHTKIAFMRGRLLGLGGSVVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVD 587

Query: 62  LEQIRSALEAKGFGDATVQNFGSARDVMVRLRPRD--DMAGEALGNQILAAIKEGTGGNV 119
              +R+ L++   G   +Q FGS  DV++RL  ++  D A   +  Q+   ++    G+ 
Sbjct: 588 FPALRTDLQSLPIGPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLERDYAGS- 646

Query: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179
           E+RR++ VG +V  EL + G +A+ ++ + +L+Y+  RFEW+   GAV+ +  DV  T+G
Sbjct: 647 EIRRVDSVGASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVG 706

Query: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLS 239
            F+I  ++ +LT +AA+LT++GYS+ND +VV+DR+REN R  R     ++++ SI +TL 
Sbjct: 707 FFAITGMQFNLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLG 766

Query: 240 RTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREHL 299
           RT+ TS  T   +I L   GG  +  FAL LL G+ + T SS+++A+ L L LG   EH 
Sbjct: 767 RTVGTSLATFLAIIPLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLLLLLG---EHR 823

Query: 300 LPP 302
           L P
Sbjct: 824 LRP 826



 Score = 74.7 bits (182), Expect = 7e-18
 Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 127 VGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQI 186
           VGP++G +   AG +AI V  + ++ Y+ + F       A +AL  ++ ITLG  S++Q 
Sbjct: 351 VGPDLGADSIRAGMIAISVGFVLVVAYMGI-FYGLFGWFANVALVFNLAITLGALSLMQA 409

Query: 187 EVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSG 246
            + L  +A LL  +G +++  I++ +RIRE  +K R    A  M +   +  +    ++ 
Sbjct: 410 TLTLPGIAGLLLSLGMAVDANILINERIREEAKKGR--GVAASMETGFKRAFATIFDSNI 467

Query: 247 TTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASAL 288
           TTL  +  LF+ G   I GFA+ + LGI V  +++I V   L
Sbjct: 468 TTLIKMAILFSIGVGTIRGFAVTISLGIIVSMFTAITVTRLL 509