Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 127 VGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQI 186
           VGP++G +   AG LA     L + +++ +         A +AL  +  +  G+ S L  
Sbjct: 315 VGPSLGADRVAAGALASAAGALAVTVFL-IAVYGLFGVFATIALGLNFCLLFGMLSGLGA 373

Query: 187 EVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSG 246
            + L  +A +   +G +++ ++++F+RI E  R     +  E + +   +  S  L  + 
Sbjct: 374 TLTLPGIAGIALTIGMAVDASVLIFERIGEEARAGLAVD--EALRAGFGKAFSAVLDANI 431

Query: 247 TTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASAL-ALKLGITREHLLP 301
            TL V   LF  GG  + GFA+ L LG     ++++ +   + AL L + R   +P
Sbjct: 432 LTLGVGALLFWLGGGPVRGFAVTLTLGAVSALFTAMLLNRLIVALWLRLARPKTIP 487



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 13 FMRWSKFAFALSLVMIAASIFTLST----------KW---LNWGLDFTGGTLIEVGFEQP 59
          F  W   A  + LV++A   F+L+           +W   L+ GLD  GG+   +  + P
Sbjct: 5  FSLWK--AIPVILVVLAGITFSLANVVPGAGEGGLRWWRPLSLGLDLKGGSTFLIDLDAP 62

Query: 60 ANLEQIRSALEAKGFGDATVQNFGSARDV 88
          A + + + AL A        +  G A ++
Sbjct: 63 ALVHETQVALAASAGAALRGERIGGAANL 91