Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis JJ

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 10/173 (5%)

Query: 107 ILAAIKEGT-GGNVEMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEW-RLAA 164
           I  A+K G+    V +  I  V P +G E  +   +A + + + +   +S R++  ++  
Sbjct: 206 IYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVL 265

Query: 165 GAVLALAHDVIITLGIFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKE 224
             ++    +V++ LG  S++  ++DL  +A ++  VG  ++  IV+ D            
Sbjct: 266 PILITGFSEVLLILGFASLINWKLDLASIAGIIAAVGTGVDHQIVITDETISG------- 318

Query: 225 EPAEIMNSSITQTLSRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVG 277
             A+ +  SI +        + TT+  ++ LF  G  M+ GFA+  + G+ +G
Sbjct: 319 -EAKKVTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMG 370



 Score = 28.5 bits (62), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 25 LVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPAN-------LEQIRSALEAKGFGDA 77
          LV + AS+  ++ K +++G+D +GG+ I +  E   +        E + S L   G  D 
Sbjct: 13 LVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTSRLNTNGLSDV 72

Query: 78 TVQNFGS 84
           +   GS
Sbjct: 73 RIYPRGS 79