Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.4 bits (150), Expect = 3e-14
 Identities = 40/166 (24%), Positives = 89/166 (53%), Gaps = 10/166 (6%)

Query: 127 VGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAV--LALAHDVIITLGIFSIL 184
           +GP++G E   +G  A+L S+  ++L++ + +    A G +  +AL  ++++ +G+ S++
Sbjct: 442 IGPSLGAENIASGINAMLWSMGAVVLFMLIYYR---AFGLIANIALTMNLVMIVGVMSMI 498

Query: 185 QIEVDLTI--VAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTL 242
              V LT+  +A ++  +G +++  +++++RIR+  R  R  + A  +        S   
Sbjct: 499 PGAV-LTLPGIAGMVLTIGMAVDGNVLIYERIRDEIRAGRSVQQA--IQEGYANAFSSIA 555

Query: 243 ITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASAL 288
            ++ TT    + LF  G   + GFA+ L++GI    +++I    A+
Sbjct: 556 DSNITTFITALILFAVGSGAVKGFAVTLMIGIATSMFTAIVGTRAI 601