Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  362 bits (929), Expect = e-105
 Identities = 179/316 (56%), Positives = 240/316 (75%), Gaps = 5/316 (1%)

Query: 1   MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60
           M +IL   + ++F++ +     +S V++  SI  L+TK LNWGLDFTGGT++E+ F  P 
Sbjct: 1   MLEILSLKRTVNFLKHALPVSIMSAVLVLGSIVLLATKGLNWGLDFTGGTVVEMSFSTPV 60

Query: 61  NLEQIRSALEAKGFGDATVQNFGSARDVMVRLRPRDDMAGEALGNQILAAIK--EGTGGN 118
           +L Q RS L       A VQN+GS+RDV+VRL  ++ ++ +    Q++  +K  +    N
Sbjct: 61  DLNQFRSQLTTPETSSAVVQNYGSSRDVLVRLPVKEGISSDV---QVVEIVKFAQQLDPN 117

Query: 119 VEMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITL 178
           V  +R+EFVGP VG EL E GGLA+LV+L+CI++Y++ RFEWRLA GAV ALAHDV++TL
Sbjct: 118 VVQKRVEFVGPQVGKELAEQGGLAVLVALICIMIYIAFRFEWRLATGAVAALAHDVMVTL 177

Query: 179 GIFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTL 238
           G+FS+ Q+E DLT++A +LTVVGYSLNDTIVVFDR+RENF KMRK EP E++N SITQT+
Sbjct: 178 GVFSLTQMEFDLTVLAGVLTVVGYSLNDTIVVFDRVRENFLKMRKSEPEEVVNVSITQTM 237

Query: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREH 298
           SRT+IT GTTL VV+ALF  GG+MIHGFA ALLLGI+VGTYSS+YVA+ LA+KLG+ RE 
Sbjct: 238 SRTIITMGTTLVVVVALFLSGGSMIHGFAAALLLGISVGTYSSVYVATYLAIKLGVNRES 297

Query: 299 LLPPQVEKEGAELDEM 314
           ++P ++EKEGA+   M
Sbjct: 298 MMPAEIEKEGADQPSM 313