Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  215 bits (548), Expect = 9e-61
 Identities = 122/290 (42%), Positives = 174/290 (60%), Gaps = 7/290 (2%)

Query: 9   KMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPANLEQIRSA 68
           K I+  +W   + A+S+ ++ AS+  +  K  NWGLDFTGG + EV  ++     +++  
Sbjct: 2   KNINLTKWRYISSAISIFLMLASLTIVCVKGFNWGLDFTGGVVTEVQLDRKITSSELQPL 61

Query: 69  LEAKGFGDATVQNFGSARDVMVRLRPRDDMAGEALGNQILAAIKEGTGGNVEMRRIEFVG 128
           L A    D +V    ++      LR  D         Q LA +     G V++     VG
Sbjct: 62  LNAAYQQDVSV--ISASEPGRWVLRYADTAQSHVDIAQTLAPL-----GEVQVLNTSVVG 114

Query: 129 PNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQIEV 188
           P VG EL E GGLA+LV++L IL Y+S RFEWRLA+GA+ AL HDV+  L  FS+ Q+E 
Sbjct: 115 PQVGKELAEQGGLALLVAMLAILGYLSYRFEWRLASGALFALVHDVMFVLAFFSLTQMEF 174

Query: 189 DLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSGTT 248
           +LT++AA+L ++GYSLND+I++ DRIRE      K    EI N +I  T SRT++TSGTT
Sbjct: 175 NLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTT 234

Query: 249 LFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREH 298
           L  V AL+  GG  + GF++A+ +GI  GT+SSI V ++L   LG+  EH
Sbjct: 235 LMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLAPEH 284