Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 44/164 (26%), Positives = 89/164 (54%), Gaps = 6/164 (3%)

Query: 127 VGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQI 186
           +GP +G E  E G  A+ + +   LL++++ +  RL   A +AL  +++I  G+ +++  
Sbjct: 444 IGPTLGAENIENGFAALGLGMGITLLFMALWYR-RLGWVANVALISNMVILFGLLALIPG 502

Query: 187 EVDLTI--VAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLIT 244
            V LT+  +A L+  VG +++  +++F+RI++  ++ R    A  +++      S     
Sbjct: 503 AV-LTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALA--IDTGFDSAFSTIFDA 559

Query: 245 SGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASAL 288
           + TT+   + L++ G   I GFAL L LG+    ++ I+ + AL
Sbjct: 560 NFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRAL 603