Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., protein translocase subunit SecD from Klebsiella michiganensis M5al

 Score = 53.1 bits (126), Expect = 2e-11
 Identities = 60/262 (22%), Positives = 114/262 (43%), Gaps = 23/262 (8%)

Query: 28  IAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPANLEQIRSALEAKGFGDATVQNFGSARD 87
           I   + TL  ++ + G     G  I    E+  N+  I+S L    F    + N   AR 
Sbjct: 361 IGKPMATLFVEYKDSGKKDANGRAILAKEEEVINIANIQSRL-GNSFRITGISNATEARQ 419

Query: 88  VMVRLRPRDDMAGEALGNQILAAIKEGTGGNVEMRRIEFVGPNVGDELTEAGGLAILVSL 147
           + + LR             ++A I+      VE R I   GP +G +  + G  A L  L
Sbjct: 420 LSLLLR----------AGALIAPIQI-----VEERTI---GPTLGMQNIKQGLEACLAGL 461

Query: 148 LCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQ-IEVDLTIVAALLTVVGYSLND 206
           +  +L++ + F  +    A  AL  ++++ +GI S++    + +  +A ++  +  +++ 
Sbjct: 462 VVSILFM-IFFYKKFGLIATSALVANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVDA 520

Query: 207 TIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSGTTLFVVIALFTQGGAMIHGF 266
            +++ +RI+E     R  + A  ++       S     + TTL  VI L+  G   I GF
Sbjct: 521 NVLINERIKEELSNGRSVQQA--IDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGF 578

Query: 267 ALALLLGITVGTYSSIYVASAL 288
           A+   +GI    +++I    A+
Sbjct: 579 AITTGIGIATSMFTAIVGTRAI 600



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 12/91 (13%)

Query: 5   LKADKMIDFMRWSKFAFALSLVMIAAS-IFTLSTKWLNWGLDFTGGT--LIEVGFE---- 57
           L+A + +  +   K+  AL+L       +  L  + +  GLD  GG   L+EV  +    
Sbjct: 85  LRAREALMGVLGDKYVVALNLAPATPRWLAALYAEPMKLGLDLRGGVHFLMEVDMDTALG 144

Query: 58  --QPANLEQIRSALEAKGFGDATVQ---NFG 83
             Q  N++ +RS L  KG    TV+   N+G
Sbjct: 145 KLQEQNIDSLRSELRDKGIPYTTVRKEDNYG 175