Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  581 bits (1497), Expect = e-170
 Identities = 313/631 (49%), Positives = 426/631 (67%), Gaps = 23/631 (3%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK 59
           MLN+YPLWKY++++  +AV  +Y+ PN+Y +DPAIQ++GA  A  V  + LD  + AL  
Sbjct: 1   MLNKYPLWKYVLILAVLAVGLIYSAPNLYPDDPAIQVSGASTALQVTQADLDRASAALKA 60

Query: 60  AQLSQKSIAL-ENGSI-LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG 117
           + +  K+ ++ ENG   L+R   ++ Q+ A+D++ +ALG D +VALNLA +TP WL  +G
Sbjct: 61  SDIEVKAASIAENGKGGLLRLVKSEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRKLG 120

Query: 118 AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV 177
           A PMKLGLDL GGVHFL+EVDM+ A++  +   E   +S LR E++RYR++  L  A+++
Sbjct: 121 AHPMKLGLDLSGGVHFLLEVDMEKALDARMKVYEGDVKSLLRKERVRYRSLPQLDGAIQL 180

Query: 178 TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR 237
              D +   Q + L+     D     ++ +G+ VL    T A+L EIR Y+++QN+T +R
Sbjct: 181 GFSDEDTREQARALIRKNFNDFDIVPADLNGQAVLRLAMTPAKLAEIREYSIKQNLTTVR 240

Query: 238 NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAA 297
           NRVNELGVAEP+VQRQGA RIVVELPGVQDTA AK ILG TA LEFR         AA  
Sbjct: 241 NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LAAEP 292

Query: 298 GRAPAGSE-IKFDRNGRPVV-LKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKM 355
           G + A SE  +F   GRP   +++ +I+ G  +TDA +  DE GRPQVNI LD  GG  M
Sbjct: 293 GASKATSESFEFREGGRPAAQIERGLIITGDQVTDAQAGFDEQGRPQVNIRLDGHGGELM 352

Query: 356 SAFSKKNIGKLMATVFAEYKD---------SGKRSPEGKVILTKHEEVINQATIQSALGR 406
           S  ++ N+G+ MA +F E K          +G           + +++I+ ATIQS LG 
Sbjct: 353 SRATRSNVGRSMAVIFIEQKPTTTYTKQVVNGVEKDVPVQTFKEEKKIISLATIQSPLGS 412

Query: 407 NFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAV 466
            FRITG++   E+  LALLLRAG L AP+   EERTIGPS+G  NI  GI A +WGM+ V
Sbjct: 413 QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFV 472

Query: 467 MLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLI 526
            LF +  YR FG+IA +AL  N+V+++ +MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct: 473 SLFIIAIYRFFGIIATVALAVNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI 531

Query: 527 FERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSI 586
           F RIREE+  G   Q+AI++G+  AF+ I DAN+TTL+   ILFA+GTG +KGFAVT+S+
Sbjct: 532 FSRIREEIAAGMTIQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL 591

Query: 587 GILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
           GI TSMFTAI+ TR +VNL++GG+   KL I
Sbjct: 592 GIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 622