Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N1B4

 Score =  575 bits (1482), Expect = e-168
 Identities = 310/631 (49%), Positives = 421/631 (66%), Gaps = 23/631 (3%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK 59
           MLN+YPLWKY++++  +A+  +Y+ PN+Y +DPAIQ++GA  A  V  + LD V+ AL  
Sbjct: 1   MLNKYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQVSGASTALQVTQADLDRVSTALKD 60

Query: 60  AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG 117
           + ++ K+  L  G    L+R    + Q+ A+D++ +ALG D +VALNLA +TP WL S+G
Sbjct: 61  SGINVKAATLAAGGKGGLIRLTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRSLG 120

Query: 118 AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV 177
           A PMKLGLDL GGVHFL+EVDMD A++  +   E   +S LR E++RYR++  L  A+++
Sbjct: 121 AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERLRYRSLPQLGGAIQL 180

Query: 178 TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR 237
              D     + + L+     D     ++ +G+ VL    T A+L EIR Y+++QN+T +R
Sbjct: 181 GFTDEAAREEARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR 240

Query: 238 NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAA 297
           NRVNELGVAEP+VQRQGA RIVVELPGVQDTA AK ILG TA LEFR         AA  
Sbjct: 241 NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LAAEP 292

Query: 298 GRAPAGSE-IKFDRNGRPVVLKKR-VILGGSSITDASSSADEYGRPQVNISLDSEGGNKM 355
           G + A SE  +F    RP  L +R +I+ G  +TDA +   E G P+VNI LD  GG  M
Sbjct: 293 GASKATSESFEFREGNRPAALIERGLIITGDQVTDAKAGFGEQGTPEVNIRLDGHGGELM 352

Query: 356 SAFSKKNIGKLMATVFAEYKD---------SGKRSPEGKVILTKHEEVINQATIQSALGR 406
           S  ++ N+G+ MA +F E +          +G           + +++I+ ATIQS LG 
Sbjct: 353 SRATRNNVGRSMAVIFIEQRPVTTYVKQVVNGVEKDVPVQTFKEEKKIISLATIQSPLGA 412

Query: 407 NFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAV 466
            FRITG++   E+  LALLLRAG L AP+   EERTIGPS+G  NI  GI A +WGM+ V
Sbjct: 413 QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFV 472

Query: 467 MLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLI 526
            LF +  YR FG+IA +AL  N+V+++ +MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct: 473 SLFIMAIYRFFGLIATVALTVNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI 531

Query: 527 FERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSI 586
           F RIREE+  G   Q+AI++G+  AF+ I DAN+TTL+   ILFA+GTG +KGFAVT+S+
Sbjct: 532 FSRIREEIAAGMTVQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL 591

Query: 587 GILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
           GI TSMFTAI+ TR +VNL++GG+   KL I
Sbjct: 592 GIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 622