Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., protein-export membrane protein, SecD/SecF family from Pseudomonas stutzeri RCH2

 Score =  608 bits (1568), Expect = e-178
 Identities = 329/630 (52%), Positives = 434/630 (68%), Gaps = 21/630 (3%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGAS-VDMSTLDAVTDALNK 59
           MLNR+PLWKYL+++  +A+A +Y+ PN+Y +DPAIQ+TGA  A  +    L+ ++ AL  
Sbjct: 1   MLNRFPLWKYLLILAVLAIAFVYSAPNLYPDDPAIQVTGASTAQEIGTEDLERISKALVD 60

Query: 60  AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG 117
             ++ KS +L+      LVR    D Q+ A+DI+   LG   +VALNLAP+TP WL S+G
Sbjct: 61  GGIAVKSASLDEQGRGGLVRLERQDDQLPAKDIVRRTLGDAYVVALNLAPTTPDWLRSLG 120

Query: 118 AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV 177
           A+PMKLGLDL GGVHFL+EVDM+ A+E  ++  E   +S LR E++RYR++  L DAV++
Sbjct: 121 ASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERVRYRSLPNLKDAVQL 180

Query: 178 TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR 237
              D   L   + L+     D   T+SE +G+FVL    TEA+L EIR Y+++QN+T +R
Sbjct: 181 GFADEATLGNAQSLIRKNFTDFELTSSERNGQFVLRLTLTEAKLAEIREYSIKQNLTTVR 240

Query: 238 NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAA 297
           NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       LAA A 
Sbjct: 241 NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LAADAD 293

Query: 298 GRAPAGSEIKFDRNGR-PVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS 356
               +    +F + GR PV L++ +I+ G  +TDA +S DE GRPQVNI LD  GG+ M+
Sbjct: 294 ASRASTEAFEFRQEGRPPVQLERTLIITGDQVTDAQASYDENGRPQVNIRLDGHGGDLMN 353

Query: 357 AFSKKNIGKLMATVFAEYKD---------SGKRSPEGKVILTKHEEVINQATIQSALGRN 407
             ++ N+G+ MA +F E +           G           + +++I+ ATIQS LG  
Sbjct: 354 RATRNNVGRSMAVIFIEQRPMTRYVRQMVDGVEQEVRVETFQEEKKIISLATIQSPLGSQ 413

Query: 408 FRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM 467
           FRITG+D   E+  LALLLRAG L AP+   EERTIGPS+G +NI +G+QA +WG + V 
Sbjct: 414 FRITGLDGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVA 473

Query: 468 LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIF 527
           +F VL Y+ FG++A IAL+ N+V++  +MSM+  AT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct: 474 IFMVLIYKFFGVLATIALLFNMVVLTAMMSML-NATLTLPGIAGIVLTMGMAVDANVLIF 532

Query: 528 ERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIG 587
            RIREE+  G + Q+AIH+G+  AFS I D N+TTL+   ILFA+GTG IKGFAVTLSIG
Sbjct: 533 SRIREEIANGMSIQRAIHEGFDRAFSAIVDGNLTTLLVGGILFAMGTGPIKGFAVTLSIG 592

Query: 588 ILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
           ILTSMFTAI+ TR +VNL+YGG+ + KL I
Sbjct: 593 ILTSMFTAIIVTRGMVNLIYGGRDLKKLWI 622