Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Xanthomonas campestris pv. campestris strain 8004

 Score =  493 bits (1270), Expect = e-144
 Identities = 268/611 (43%), Positives = 393/611 (64%), Gaps = 11/611 (1%)

Query: 5   YPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQ 64
           +P WKY ++++ +AV+ALYALPN+Y +DP++QIT +RGA +D +    +   L  A ++ 
Sbjct: 12  FPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDADLKSAGITP 71

Query: 65  KSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPMKLG 124
           K++  E  S++VR      Q  A D++ + LG++  VALNLA + P WL  +G  PM LG
Sbjct: 72  KAVTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLG 131

Query: 125 LDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSD-AVEVTLRDAE 183
           LDL GGVHF M+VD  AA+EK +    E  R+ LRD +I YR++    D +++V+L +  
Sbjct: 132 LDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGDNSIQVSLGEGA 191

Query: 184 QLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRVNEL 243
                +  L      +T+  S   G+ + V K  EA L++I + A+EQN+T LRNRVN L
Sbjct: 192 SADAARTALAKSQPTLTYDVS---GQTISV-KVPEAELKQIASGAIEQNLTTLRNRVNAL 247

Query: 244 GVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAG 303
           GV+EP +QRQG  RIVVELPG+QDTA AK ++GATA+LEFR V +     A  +G  P  
Sbjct: 248 GVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDAVRSGTIPPE 307

Query: 304 SEI-KFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKN 362
           +++ +   +  PV+L KR ++ G  +  AS S D+ G P V ++L++  G +M  ++  N
Sbjct: 308 AKVYRLRDSNAPVLLNKRALVTGDQMVSASVSNDQNGMPAVAVTLNNVAGQRMLDYTSAN 367

Query: 363 IGKLMATVFAEYKDSGKRSPEGKVI--LTKHEEVINQATIQSALGRNFRITGIDSPAEAH 420
           +GKLM+ V+ E +       +GK +  +   EE ++   I    G+NF+ TG++   EA 
Sbjct: 368 VGKLMSVVYIE-RIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEK-TEAE 425

Query: 421 NLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI 480
           NLA LL++G+L AP+  VEE  IGPS+G +N++ G+ A ++  V  ++F  +YYR FG I
Sbjct: 426 NLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYRMFGAI 485

Query: 481 ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP 540
            ++AL+ NL+++I VMS+  GATMTLPG AG+ L+VG++VDANVLI ERIREELR G  P
Sbjct: 486 TSVALLFNLLIVIAVMSLF-GATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPP 544

Query: 541 QQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTR 600
           + AI  GY  A  TI DAN+T LI  + L+A GTG +KGFA+T+ IGI  SMFTAI  +R
Sbjct: 545 KSAIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSR 604

Query: 601 CIVNLLYGGKR 611
            +  L+YG ++
Sbjct: 605 ALAVLIYGSRK 615