Pairwise Alignments
Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056
Subject, 622 a.a., SecD/SecF/SecDF export membrane protein:SecD export membrane protein from Pseudomonas syringae pv. syringae B728a
Score = 577 bits (1488), Expect = e-169
Identities = 314/630 (49%), Positives = 424/630 (67%), Gaps = 21/630 (3%)
Query: 1 MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK 59
MLN+YPLWKY++++ + V +Y+ PN+Y +D AIQI+GA A V+ + +D AL
Sbjct: 1 MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALAD 60
Query: 60 AQLSQKSIAL-ENGSI-LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG 117
A +S K+ +L ENG L+R + + Q+ A+D++ +ALG D +VALNLA +TP WL ++G
Sbjct: 61 AGISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLG 120
Query: 118 AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV 177
A+PMKLGLDL GGVHFL+EVDMD A++ + E +S LR EK+RYR++ L + +++
Sbjct: 121 ASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSLPQLGNVIQL 180
Query: 178 TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR 237
D + Q + L+ D T +E +G VL T A+L EIR Y+++QN+T +R
Sbjct: 181 GFTDDAEREQARALVRKSFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR 240
Query: 238 NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAA 297
NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR L A
Sbjct: 241 NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD 293
Query: 298 GRAPAGSEIKFDRNGRPVVLKKR-VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS 356
+F GRP +R +I+ G +TDA +S DE+GRPQVNI+LD GG MS
Sbjct: 294 DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS 353
Query: 357 AFSKKNIGKLMATVFAEYKDS---------GKRSPEGKVILTKHEEVINQATIQSALGRN 407
++ N+G+ MA +F E + + G + +++I+ ATIQS LG
Sbjct: 354 RATRSNVGRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQ 413
Query: 408 FRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM 467
FRITG++ E+ LALLLRAG L AP+ EERTIGPS+G NI GI A +WGM+ V
Sbjct: 414 FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVS 473
Query: 468 LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIF 527
+F + YR FG+IA +AL N+V+++ +MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct: 474 IFIMAIYRFFGLIATVALALNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF 532
Query: 528 ERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIG 587
RIREE+ G Q+AI++G+ A++ I DAN+TTL+ ILFA+GTG +KGFAVT+S+G
Sbjct: 533 SRIREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG 592
Query: 588 ILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
I TSMFTAI+ TR +VNL+YGG+ KL I
Sbjct: 593 IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622