Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., SecD/SecF/SecDF export membrane protein:SecD export membrane protein from Pseudomonas syringae pv. syringae B728a

 Score =  577 bits (1488), Expect = e-169
 Identities = 314/630 (49%), Positives = 424/630 (67%), Gaps = 21/630 (3%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK 59
           MLN+YPLWKY++++  + V  +Y+ PN+Y +D AIQI+GA  A  V+ + +D    AL  
Sbjct: 1   MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALAD 60

Query: 60  AQLSQKSIAL-ENGSI-LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG 117
           A +S K+ +L ENG   L+R +  + Q+ A+D++ +ALG D +VALNLA +TP WL ++G
Sbjct: 61  AGISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLG 120

Query: 118 AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV 177
           A+PMKLGLDL GGVHFL+EVDMD A++  +   E   +S LR EK+RYR++  L + +++
Sbjct: 121 ASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSLPQLGNVIQL 180

Query: 178 TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR 237
              D  +  Q + L+     D   T +E +G  VL    T A+L EIR Y+++QN+T +R
Sbjct: 181 GFTDDAEREQARALVRKSFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR 240

Query: 238 NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAA 297
           NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L A   
Sbjct: 241 NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD 293

Query: 298 GRAPAGSEIKFDRNGRPVVLKKR-VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS 356
                    +F   GRP    +R +I+ G  +TDA +S DE+GRPQVNI+LD  GG  MS
Sbjct: 294 DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS 353

Query: 357 AFSKKNIGKLMATVFAEYKDS---------GKRSPEGKVILTKHEEVINQATIQSALGRN 407
             ++ N+G+ MA +F E + +         G           + +++I+ ATIQS LG  
Sbjct: 354 RATRSNVGRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQ 413

Query: 408 FRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM 467
           FRITG++   E+  LALLLRAG L AP+   EERTIGPS+G  NI  GI A +WGM+ V 
Sbjct: 414 FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVS 473

Query: 468 LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIF 527
           +F +  YR FG+IA +AL  N+V+++ +MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct: 474 IFIMAIYRFFGLIATVALALNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF 532

Query: 528 ERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIG 587
            RIREE+  G   Q+AI++G+  A++ I DAN+TTL+   ILFA+GTG +KGFAVT+S+G
Sbjct: 533 SRIREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG 592

Query: 588 ILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
           I TSMFTAI+ TR +VNL+YGG+   KL I
Sbjct: 593 IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622