Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 1056 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Synechococcus elongatus PCC 7942

 Score = 56.2 bits (134), Expect = 7e-12
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 22/156 (14%)

Query: 463 MVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIP--GATMTLPGIAGIVLTVGMAV 520
           +V +++F  L   +  +I  IA+  +LV   G ++ I   G ++ L  + G+VL  G+ V
Sbjct: 356 LVILVIFIFLQDWRTTLIPAIAIPVSLV---GTLAFIQAFGFSINLLTLFGLVLATGLVV 412

Query: 521 DANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAV-------- 572
           D  +++ E I E++ EGK P QA  +     F  +       + T+++LFAV        
Sbjct: 413 DDAIVVVEAITEKIEEGKTPLQASIEAMDILFGAV-------IATSVVLFAVFIPVAFFP 465

Query: 573 -GTGAI-KGFAVTLSIGILTSMFTAIVGTRCIVNLL 606
             TG I + FA+TL+  IL S F A+  +  +  LL
Sbjct: 466 GATGRIYQQFALTLTFTILISTFNALTFSPAMSALL 501



 Score = 30.0 bits (66), Expect = 5e-04
 Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 447  MGQQNIDMGIQA-CIWGMVAVMLFTVLYYRKFGMIANIALMANLVL-IIGVMSMIP--GA 502
            + ++ +  G  A  I+G+  V++F VL       +  + ++  + L I+G +  +   G 
Sbjct: 866  LAREEVSAGTLAPLIFGLGVVVVFLVLAALYESYVDPLIILLTVPLAILGALVFLNLRGI 925

Query: 503  TMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITT 562
             + +    G+V+ +G+A    +LI +   E + +G    +A  +     F  I    I++
Sbjct: 926  PLDVYAQVGLVMLIGLASKNAILIVDYANEAVAKGMGYTEAALEAAKLRFRPIVMTAISS 985

Query: 563  LITAI-ILFAVGTGA 576
            LI    ++ A G GA
Sbjct: 986  LIGFFPLVIAQGAGA 1000