Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., preprotein translocase subunit SecD from Synechococcus elongatus PCC 7942

 Score =  231 bits (588), Expect = 7e-65
 Identities = 154/419 (36%), Positives = 241/419 (57%), Gaps = 41/419 (9%)

Query: 211 VLVAKFTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTAR 270
           +LV   TE  +  + +  +E    ++ NRVN LGV+E ++Q  G+ +I+V+LPGV +  +
Sbjct: 41  ILVKPTTE--IPSVGDRELEAVQRVIENRVNGLGVSEAVIQTAGSDKILVQLPGVSNPEQ 98

Query: 271 AKEILGATATLEFREVDDKADLAAAA----AGRAPAGSEIKFDRNGRPVVL--------K 318
           A+ +LG TA LEFRE +   +           +A    EI+  RNG P  +        +
Sbjct: 99  AERVLGGTAQLEFREQNPGTEAQVTPLQQLVSQARGALEIE-RRNGDPTKVAELEQTLER 157

Query: 319 KRVILG---------GSSITDASSSADEYGRP-QVNISLDSEGGNKMSAFSKKNIGKLMA 368
            +V L          G S+ DA +   + G   +V +  D+EGG++ +A +K   G   +
Sbjct: 158 SQVELAKFFGPAQITGKSLKDALAQPTQTGNTWEVALRFDTEGGDQFAALTKNLAGTGRS 217

Query: 369 T-VFAEYKDSGKRSPEGKVILTKHEEVINQATIQSAL-GRNFRITGIDSPAEAHNLALLL 426
             +F +          G +I      V+     Q+ + G +  ITG  +  +A +LA+ L
Sbjct: 218 IGIFLD----------GVLISAP---VVGPEFAQTGITGGSAVITGRFTTEQAEDLAIQL 264

Query: 427 RAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMIANIALM 486
           R GAL  P+ IVE RT+G ++G+ +I   I A I G++ V++F V YY+  G+IA+I+L 
Sbjct: 265 RGGALPLPVEIVENRTVGATLGRDSIQRSIYAGIGGLLLVLIFMVAYYQLPGLIADISLA 324

Query: 487 ANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQ 546
              +L +    ++ G T+TLPGIAG +L++GMAVDANVLIFER REELR GK+  +++  
Sbjct: 325 IYALLSLAAFDLL-GVTLTLPGIAGFLLSIGMAVDANVLIFERTREELRAGKSLYRSVES 383

Query: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNL 605
           G+  AFS+I D+N+TTLI    LF + +G +KGFA+TL+IG++ SMFTAI  +R ++ L
Sbjct: 384 GFYRAFSSILDSNVTTLIACGALFWLSSGLVKGFALTLAIGVMVSMFTAITCSRTLMFL 442