Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., preprotein translocase subunit SecD/SecF from Sinorhizobium meliloti 1021

 Score =  244 bits (622), Expect = 1e-68
 Identities = 168/514 (32%), Positives = 269/514 (52%), Gaps = 39/514 (7%)

Query: 110 PYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIR 169
           P WL       + LGLDLRGG H +++V  +  + + +    +     LR   IRY  + 
Sbjct: 37  PTWLPH---RQVPLGLDLRGGSHIVLKVSREDIVAERLQSTIDTIADALRQADIRYTGLS 93

Query: 170 PLSDAVEVTLRDAEQLAQT----KLLLESKHRDMTFTTS-------ESDGRFVLVAKFTE 218
                ++  LRDA +        K L+    +   F  S       ES     L  + T+
Sbjct: 94  GSGQGLQFRLRDATKAPAARDALKALVAPVRQGGLFGNSIQELVYEESATSDTLRLRLTD 153

Query: 219 ARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGAT 278
             +    + AV Q+I ++R RV E+    P+++R+G  R+ V++PG+ +  R K++LG  
Sbjct: 154 EGIDLRVSDAVAQSIEVVRRRVGEVIAVVPIIERRGGDRLSVQVPGLDEPQRLKDLLGQR 213

Query: 279 ATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPV--VLKKRVILGGSSITDASSSAD 336
             +  + +D       A   R PAGSE+ +  +  P+  ++++R         +A    D
Sbjct: 214 GDVALKWLDSSMPAQQAVDTRPPAGSEVLYSLDDPPIPYLVERRAFAAAPDFVEAQPGFD 273

Query: 337 EY-GRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVI 395
                P VN  + +    +++ F + +  K  A V            +G+VI T      
Sbjct: 274 PATSEPVVNARIAAGAAARVAPFLQSDPRKQFAIVL-----------DGQVIST------ 316

Query: 396 NQATIQSAL-GRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454
             + +  AL G   RI+G  S   A++LA L+RAG L   ++++EERT+GP  G   +  
Sbjct: 317 --SVLDGALSGDAVRISGNLSEDGANDLAALMRAGPLPVSLTVIEERTVGPEDGADAVAN 374

Query: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514
           G+ A +   +AV    + +Y  FG++A IA++ N+VLII V+S + GAT+TLPGIAGI+L
Sbjct: 375 GLTAGLIAAIAVAACMIGFYGFFGVVAVIAVIVNVVLIIAVLS-VTGATLTLPGIAGIIL 433

Query: 515 TVGMAVDANVLIFERIREELR-EGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 573
           T+G+AVD+NVLI+ER+REE R  GK  ++A+  G+     +I DAN+T  I   IL  +G
Sbjct: 434 TIGIAVDSNVLIYERLREEARTSGKPLRRALDDGFERVLRSIVDANLTIFIAGAILLYLG 493

Query: 574 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLY 607
           +GAI+GFAVTL+IG +T++ TA   TR ++   Y
Sbjct: 494 SGAIRGFAVTLAIGSVTTILTAHSLTRRLIRGWY 527



 Score = 54.3 bits (129), Expect = 2e-11
 Identities = 40/158 (25%), Positives = 81/158 (51%), Gaps = 5/158 (3%)

Query: 443 IGPSMGQQNIDMGIQACIWGMVAVMLFTVLYY-RKFGMIANIALMANLVLIIGVMSMIPG 501
           +GP +  +    G  A    ++AV+L+  L + R+F + A +A + +++L +G + ++ G
Sbjct: 664 VGPGVSGELTRAGSLAVAAAVLAVLLYVWLRFGRRFAVGAIVATLHDVLLTLGFL-VLTG 722

Query: 502 ATMTLPGIAGIVLTVGMAVDANVLIFERIREEL-REGKNPQQAIHQGYAN-AFSTIADAN 559
               L  IA ++  V  ++   ++I++R+RE L R  + P   +     N   S      
Sbjct: 723 IEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRYRRMPLSVLIDTSINQTLSRTVLTA 782

Query: 560 ITTLITAIILFAVG-TGAIKGFAVTLSIGILTSMFTAI 596
           +TTL+  + L+  G +G ++ F+ TL  G+L    ++I
Sbjct: 783 VTTLLALVALYLFGGSGLVQSFSATLIFGVLVGTVSSI 820



 Score = 26.2 bits (56), Expect = 0.006
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 48  STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDII 91
           ST+D + DAL +A +    ++     +  R  D     +ARD +
Sbjct: 73  STIDTIADALRQADIRYTGLSGSGQGLQFRLRDATKAPAARDAL 116